RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 GTF2A1LQ9UNN4 478 aa14.7□□□□□ -0.06
CLN3-217ENST00000565354 TMEM269A0A1B0GVZ9 245 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 A0A1W2PQL4 384 aaPredicted RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 DAPL1A0PJW8 107 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 RRP9O43818 475 aaKnown RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 LY6HO94772 140 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 CSF3P09919 207 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 DBTP11182 482 aaKnown RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 TNFSF4P23510 183 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 PDLIM4P50479 330 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 AQP4P55087 323 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 ROM1Q03395 351 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 GK2Q14410 553 aaPredicted RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 TSTQ16762 297 aaKnown RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 FAM220AQ7Z4H9 259 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 YIPF7Q8N8F6 280 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 BHLHE23Q8NDY6 225 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 CNIH3Q8TBE1 160 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 GTF3AQ92664 365 aaKnown RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 MRPL48Q96GC5 212 aaKnown RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 DIRC2Q96SL1 478 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 MYCBPQ99417 103 aaPredicted RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 RHNO1Q9BSD3 238 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 MSL2Q9HCI7 577 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 AMBNQ9NP70 447 aa14.69□□□□□ -0.06
CLN3-217ENST00000565354 MYOZ1Q9NP98 299 aaPredicted RBP14.69□□□□□ -0.06
CLN3-217ENST00000565354 MALRD1Q5VYJ5 2156 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 FADS2O95864 444 aaKnown RBP14.68□□□□□ -0.06
CLN3-217ENST00000565354 DAOP14920 347 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 CFL1P23528 166 aaKnown RBP14.68□□□□□ -0.06
CLN3-217ENST00000565354 MAGEB1P43366 347 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 MMP15P51511 669 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 PRSS12P56730 875 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 DSCR9P59020 149 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 ZNF92Q03936 586 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 KLHL22Q53GT1 634 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 TMEM255AQ5JRV8 349 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 ZNF525Q8N782 197 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 UBASH3BQ8TF42 649 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 APH1BQ8WW43 257 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 LGALS12Q96DT0 336 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 REEP6Q96HR9 211 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 C19orf24Q9BVV8 132 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 BEX2Q9BXY8 128 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 EGLN1Q9GZT9 426 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 TMEM160Q9NX00 188 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 ZDHHC8Q9ULC8 765 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 HSPE1-MOB4S4R3N1 261 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 ARFGEF3Q5TH69 2177 aa14.68□□□□□ -0.06
CLN3-217ENST00000565354 A0A096LNT2 108 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 METTL15A6NJ78 407 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 ZSCAN5BA6NJL1 495 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 IQCF6A8MYZ5 107 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 LOC110117498-PIK3R3F6TDL0 507 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 H0YJX3 145 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 MAGEB4O15481 346 aaPredicted RBP14.67□□□□□ -0.06
CLN3-217ENST00000565354 RPP14O95059 124 aaKnown RBP14.67□□□□□ -0.06
CLN3-217ENST00000565354 IGHV1-46P01743 117 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 DCTDP32321 178 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 CCL8P80075 99 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 RAB40BQ12829 278 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 TMEM249Q2WGJ8 235 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 FAM209AQ5JX71 171 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 PLEKHG7Q6ZR37 379 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 SSX6Q7RTT6 188 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 COMMD2Q86X83 199 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 ACBD7Q8N6N7 88 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 OR8G5Q8NG78 346 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 OR2Z1Q8NG97 314 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 OR13G1Q8NGZ3 307 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 FAM168AQ92567 244 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 ELMOD3Q96FG2 381 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 SAP30LQ9HAJ7 183 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 GNG8Q9UK08 70 aa14.67□□□□□ -0.06
CLN3-217ENST00000565354 EXOGQ9Y2C4 368 aaKnown RBP14.67□□□□□ -0.06
CLN3-217ENST00000565354 IGHV4-30-2A0A087WSY4 118 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 IRGMA1A4Y4 181 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 C5orf63A6NC05 138 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 ACOD1A6NK06 481 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 PRR32B1ATL7 298 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 HPXP02790 462 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 THBS2P35442 1172 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 ISL1P61371 349 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 TNFAIP6P98066 277 aaPredicted RBP14.66□□□□□ -0.06
CLN3-217ENST00000565354 IZUMO2Q6UXV1 221 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 OR8B12Q8NGG6 310 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 PIMREGQ9BSJ6 248 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 PBOV1Q9GZY1 135 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 RGCCQ9H4X1 137 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 MOB1AQ9H8S9 216 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 TMEM100Q9NV29 134 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 NKIRAS2Q9NYR9 191 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 LPAR3Q9UBY5 353 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 MRM2Q9UI43 246 aaKnown RBP14.66□□□□□ -0.06
CLN3-217ENST00000565354 R4GMQ9 66 aa14.66□□□□□ -0.06
CLN3-217ENST00000565354 CD300LBA8K4G0 201 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 WBP4O75554 376 aaKnown RBP14.65□□□□□ -0.06
CLN3-217ENST00000565354 SULT1C4O75897 302 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 GNAO1P09471 354 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 TACSTD2P09758 323 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms