RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 LHBP01229 141 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 SFTPBP07988 381 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 C11orf91Q3C1V1 193 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 SFRP4Q6FHJ7 346 aaPredicted RBP14.19□□□□□ -0.14
CLN3-216ENST00000565316 TREML4Q6UXN2 200 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 RASSF6Q6ZTQ3 369 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 SPATC1Q76KD6 591 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 DCXRQ7Z4W1 244 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 SLC37A3Q8NCC5 494 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 OR9Q2Q8NGE9 314 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 OR51L1Q8NGJ5 315 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 OR4C15Q8NGM1 316 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 SPSB4Q96A44 273 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 TECTBQ96PL2 329 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 TBX15Q96SF7 602 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 KCNJ15Q99712 375 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 MMADHCQ9H3L0 296 aaPredicted RBP14.19□□□□□ -0.14
CLN3-216ENST00000565316 C1orf123Q9NWV4 160 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 NOTCH1P46531 2555 aa14.19□□□□□ -0.14
CLN3-216ENST00000565316 CENPVL3A0A0U1RRI6 287 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 A0A1B0GUS0 222 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 FAM181BA6NEQ2 426 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 OOEPA6NGQ2 149 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 C3orf80F5H4A9 247 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 TNFRSF11BO00300 401 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 ADAM20O43506 726 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 GASTP01350 101 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 OMGP23515 440 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 MAGEA2P43356 314 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 ENTPD1P49961 510 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 SLC25A1P53007 311 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 OR8B8Q15620 311 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 GCSAMQ8N6F7 178 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 BOLLQ8N9W6 283 aaKnown RBP14.18□□□□□ -0.14
CLN3-216ENST00000565316 OR56B2PQ8NGI1 322 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 SLAMF6Q96DU3 332 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 FAM71F1Q96KD3 344 aaPredicted RBP14.18□□□□□ -0.14
CLN3-216ENST00000565316 PCGF1Q9BSM1 259 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 COPS4Q9BT78 406 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 FAM107BQ9H098 131 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 SMURF1Q9HCE7 757 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 ARL8BQ9NVJ2 186 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 TAGLN3Q9UI15 199 aa14.18□□□□□ -0.14
CLN3-216ENST00000565316 ZNF593O00488 134 aaPredicted RBP14.17□□□□□ -0.14
CLN3-216ENST00000565316 FCN3O75636 299 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 TOX4O94842 621 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 NDUFA7O95182 113 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 FMO3P31513 532 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 DDOSTP39656 456 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 PRKXP51817 358 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 MZT1Q08AG7 82 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 TEX36Q5VZQ5 186 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 RUSC1-AS1Q66K80 236 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 ZNF826PQ6ZT77 177 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 FAM90A1Q86YD7 464 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 PNLDC1Q8NA58 520 aaKnown RBP14.17□□□□□ -0.14
CLN3-216ENST00000565316 ZNF511Q8NB15 262 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 OR9Q1Q8NGQ5 310 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 WDFY2Q96P53 400 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 SIRPDQ9H106 197 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 C14orf119Q9NWQ9 140 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 KIF17Q9P2E2 1029 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 KAAG1Q9UBP8 84 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 BAIAP2Q9UQB8 552 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 POMT1Q9Y6A1 747 aa14.17□□□□□ -0.14
CLN3-216ENST00000565316 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.16□□□□□ -0.14
CLN3-216ENST00000565316 XRCC2O43543 280 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 GRPP07492 148 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 MELTFP08582 738 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 SPARCP09486 303 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 SLC2A1P11166 492 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 SPI1P17947 270 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 CRMP1Q14194 572 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 TAF13Q15543 124 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 OCLNQ16625 522 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 C16orf89Q6UX73 402 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 CPLX4Q7Z7G2 160 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 C11orf53Q8IXP5 236 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 DEFB107AQ8IZN7 70 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 OR4Q3Q8NH05 313 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 OR4F5Q8NH21 305 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 TSSK6Q9BXA6 273 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 CHIAQ9BZP6 476 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 RASSF4Q9H2L5 321 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 MARCH7Q9H992 704 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 BEX1Q9HBH7 125 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 CENPMQ9NSP4 180 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 NDE1Q9NXR1 346 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 C1RLQ9NZP8 487 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 ACTR3BQ9P1U1 418 aa14.16□□□□□ -0.14
CLN3-216ENST00000565316 DHRS12A0PJE2 317 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 ZNF878C9JN71 531 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 CCNB2O95067 398 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 ECDO95905 644 aaPredicted RBP14.15□□□□□ -0.14
CLN3-216ENST00000565316 GYPAP02724 150 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 GYPBP06028 91 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 ATP6V1B2P21281 511 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 RAG2P55895 527 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 FAM3AP98173 230 aa14.15□□□□□ -0.14
CLN3-216ENST00000565316 RELBQ01201 579 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms