RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ZNF620Q6ZNG0 422 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 RHOUQ7L0Q8 258 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 PNLDC1Q8NA58 520 aaKnown RBP13.95□□□□□ -0.18
CLN3-211ENST00000564091 CYB561A3Q8NBI2 242 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 OR51L1Q8NGJ5 315 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 SSMEM1Q8WWF3 244 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 PYURFQ96I23 114 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 SIRPDQ9H106 197 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 CCDC134Q9H6E4 229 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 SPAG4Q9NPE6 437 aa13.95□□□□□ -0.18
CLN3-211ENST00000564091 NOP16Q9Y3C1 178 aaKnown RBP13.95□□□□□ -0.18
CLN3-211ENST00000564091 IGHV3OR15-7A0A075B7D8 119 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 IGHV1-69DA0A0B4J2H0 117 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 A0A0U1RQK1 487 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 A6NLC8 198 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 IDH3BO43837 385 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 IGHV1-69P01742 117 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 IGHV4-59P01825 116 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 SEMG1P04279 462 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 SLC2A1P11166 492 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 GSSP48637 474 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 PRKXP51817 358 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 OCLNQ16625 522 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 BTN2A1Q7KYR7 527 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 FAM90A1Q86YD7 464 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 FGFRL1Q8N441 504 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 GCSAMQ8N6F7 178 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 PLPP7Q8NBV4 271 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 PROKR2Q8NFJ6 384 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 DDOQ99489 341 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 TRIM15Q9C019 465 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 EGLN3Q9H6Z9 239 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 GORASP2Q9H8Y8 452 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 MRPL15Q9P015 296 aaKnown RBP13.94□□□□□ -0.18
CLN3-211ENST00000564091 KCNG2Q9UJ96 466 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 POMT1Q9Y6A1 747 aa13.94□□□□□ -0.18
CLN3-211ENST00000564091 A0A1B0GW55 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 hCG_1807616A0A1W2PRN6 198 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DVL1O14640 695 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 NDUFA2O43678 99 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 GPR137BO60478 399 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L2P0CJ85 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L3P0CJ86 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L4P0CJ87 422 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L5P0CJ88 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L6P0CJ89 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L7P0CJ90 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 RRM2P31350 389 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 ELF3P78545 371 aaPredicted RBP13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4L9Q6RFH8 374 aaPredicted RBP13.93□□□□□ -0.18
CLN3-211ENST00000564091 DRAM2Q6UX65 266 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 OR56B2PQ8NGI1 322 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 TBC1D15Q8TC07 691 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 GNPDA2Q8TDQ7 276 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 CMTM5Q96DZ9 223 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 COPS4Q9BT78 406 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 DUX4Q9UBX2 424 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 RNF114Q9Y508 228 aa13.93□□□□□ -0.18
CLN3-211ENST00000564091 M0QZ24 198 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 OTX1P32242 354 aaPredicted RBP13.92□□□□□ -0.18
CLN3-211ENST00000564091 MSX2P35548 267 aaPredicted RBP13.92□□□□□ -0.18
CLN3-211ENST00000564091 IFNGR2P38484 337 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 TSPAN31Q12999 210 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 PDCD1Q15116 288 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 ASPHD2Q6ICH7 369 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 PGBD2Q6P3X8 592 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 DCXRQ7Z4W1 244 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 SPERTQ8NA61 448 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 SCCPDHQ8NBX0 429 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 LINC01006Q8NI28 216 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 ST8SIA4Q92187 359 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 DYRK2Q92630 601 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 MCUR1Q96AQ8 359 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 TRIM36Q9NQ86 728 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 CENPMQ9NSP4 180 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 ZNF446Q9NWS9 450 aa13.92□□□□□ -0.18
CLN3-211ENST00000564091 BHLHE40O14503 412 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 LHBP01229 141 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 SPARCP09486 303 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 IER3P46695 156 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 PRB3Q04118 309 aaPredicted RBP13.91□□□□□ -0.18
CLN3-211ENST00000564091 TAF13Q15543 124 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 C11orf53Q8IXP5 236 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 PIP4P2Q8N4L2 257 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 OR9Q1Q8NGQ5 310 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 OR2T4Q8NH00 348 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 CCL13Q99616 98 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 RBM4BQ9BQ04 359 aaKnown RBP13.91□□□□□ -0.18
CLN3-211ENST00000564091 MYLK2Q9H1R3 596 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 MMP27Q9H306 513 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 CNTD2Q9H8S5 307 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 CDH10Q9Y6N8 788 aa13.91□□□□□ -0.18
CLN3-211ENST00000564091 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.9□□□□□ -0.18
CLN3-211ENST00000564091 TIMM23O14925 209 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 ECDO95905 644 aaPredicted RBP13.9□□□□□ -0.18
CLN3-211ENST00000564091 FABP3P05413 133 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 TEX36Q5VZQ5 186 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 WDR86Q86TI4 376 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 LDLRAD3Q86YD5 345 aa13.9□□□□□ -0.18
CLN3-211ENST00000564091 ZDHHC21Q8IVQ6 265 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms