RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 CENPAP49450 140 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 ARF6P62330 175 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 CDONQ4KMG0 1287 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 FGD3Q5JSP0 725 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 DRAM2Q6UX65 266 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 BTN2A1Q7KYR7 527 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 MRPL21Q7Z2W9 205 aaKnown RBP13.53□□□□□ -0.24
CLN3-208ENST00000561505 OR2AJ1Q8NGZ0 328 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 OR4K13Q8NH42 304 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 LHX4Q969G2 390 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 PKP2Q99959 881 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 ADAT1Q9BUB4 502 aaKnown RBP13.53□□□□□ -0.24
CLN3-208ENST00000561505 RASSF4Q9H2L5 321 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 MMADHCQ9H3L0 296 aaPredicted RBP13.53□□□□□ -0.24
CLN3-208ENST00000561505 RNPEPL1Q9HAU8 725 aa13.53□□□□□ -0.24
CLN3-208ENST00000561505 KRCC1Q9NPI7 259 aaPredicted RBP13.53□□□□□ -0.24
CLN3-208ENST00000561505 RPRD1BQ9NQG5 326 aaKnown RBP13.53□□□□□ -0.24
CLN3-208ENST00000561505 C3orf80F5H4A9 247 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 MUC1P15941 1255 aaPredicted RBP13.52□□□□□ -0.25
CLN3-208ENST00000561505 NCK1P16333 377 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 ZNF826PQ6ZT77 177 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.52□□□□□ -0.25
CLN3-208ENST00000561505 FAM86B1Q8N7N1 296 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 FANK1Q8TC84 345 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 LRTOMTQ8WZ04 291 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 SPTSSAQ969W0 71 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 DPAGT1Q9H3H5 408 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 CCDC134Q9H6E4 229 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 OPA3Q9H6K4 179 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 EFCAB1Q9HAE3 211 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 ZNRD1Q9P1U0 126 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 CD300AQ9UGN4 299 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 ZNF281Q9Y2X9 895 aa13.52□□□□□ -0.25
CLN3-208ENST00000561505 A0A1B0GVI7 797 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.51□□□□□ -0.25
CLN3-208ENST00000561505 GPR37O15354 613 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 OR10H3O60404 316 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 TSPAN15O95858 294 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 H2AFXP16104 143 aaPredicted RBP13.51□□□□□ -0.25
CLN3-208ENST00000561505 DDOSTP39656 456 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 TGM4P49221 684 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 SMIM11AP58511 58 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 OR8B8Q15620 311 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 GLYATL3Q5SZD4 288 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 ATPAF1Q5TC12 328 aaPredicted RBP13.51□□□□□ -0.25
CLN3-208ENST00000561505 C8orf46Q8TAG6 207 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 FAM162AQ96A26 154 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 GORASP2Q9H8Y8 452 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 C1orf123Q9NWV4 160 aa13.51□□□□□ -0.25
CLN3-208ENST00000561505 SAMD4AQ9UPU9 718 aaKnown RBP13.51□□□□□ -0.25
CLN3-208ENST00000561505 SASH3O75995 380 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 DIRAS1O95057 198 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 GYPAP02724 150 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 PSKH1P11801 424 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 AMY2BP19961 511 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 MZT1Q08AG7 82 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 TEX30Q5JUR7 227 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 KPRPQ5T749 579 aaPredicted RBP13.5□□□□□ -0.25
CLN3-208ENST00000561505 GLYATQ6IB77 296 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 C1orf122Q6ZSJ8 110 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 WDR86Q86TI4 376 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 OR52J3Q8NH60 311 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 OR2AE1Q8NHA4 323 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 ZNRF4Q8WWF5 429 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 TNFRSF14Q92956 283 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 UBE2FQ969M7 185 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 KCTD14Q9BQ13 255 aaPredicted RBP13.5□□□□□ -0.25
CLN3-208ENST00000561505 TLNRD1Q9H1K6 362 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 TCF7L1Q9HCS4 588 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 C14orf119Q9NWQ9 140 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 VPREB3Q9UKI3 123 aa13.5□□□□□ -0.25
CLN3-208ENST00000561505 GGT3PA6NGU5 568 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 BHLHE40O14503 412 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 FBP1P09467 338 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 TGFBR2P37173 567 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 TSPAN31Q12999 210 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 FBLN7Q53RD9 439 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 VMO1Q7Z5L0 202 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 Q8N7P7 452 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 SDR9C7Q8NEX9 313 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 OR56B2PQ8NGI1 322 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 C12orf43Q96C57 262 aaKnown RBP13.49□□□□□ -0.25
CLN3-208ENST00000561505 KCNJ15Q99712 375 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 IFT27Q9BW83 186 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 FN3KQ9H479 309 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 FBLN5Q9UBX5 448 aa13.49□□□□□ -0.25
CLN3-208ENST00000561505 PRPF19Q9UMS4 504 aaKnown RBP13.49□□□□□ -0.25
CLN3-208ENST00000561505 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.48□□□□□ -0.25
CLN3-208ENST00000561505 RNASEK-C17orf49H0YIS7 233 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 XRCC2O43543 280 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 GADD45GO95257 159 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 HMGA2P52926 109 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLN3-208ENST00000561505 SF3A3Q12874 501 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLN3-208ENST00000561505 WDR82Q6UXN9 313 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 PRSS45Q7RTY3 260 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 ZDHHC21Q8IVQ6 265 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 FGFRL1Q8N441 504 aa13.48□□□□□ -0.25
CLN3-208ENST00000561505 BOLLQ8N9W6 283 aaKnown RBP13.48□□□□□ -0.25
CLN3-208ENST00000561505 PYURFQ96I23 114 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms