RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TIMM8AO60220 97 aaPredicted RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 LY6G6DO95868 133 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 IGHV3-13P01766 116 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 CTLA4P16410 223 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 TNFRSF1AP19438 455 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 FMO3P31513 532 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 SLC15A1P46059 708 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 RAB25P57735 213 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.44□□□□□ -1.223e-7■■■■□ 20.8
USP3-208ENST00000558285 TAF13Q15543 124 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 HFEQ30201 348 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 CLEC12AQ5QGZ9 265 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 MBNL2Q5VZF2 373 aaKnown RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 CD300LDQ6UXZ3 194 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ZNF782Q6ZMW2 699 aaPredicted RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 DNM1P46Q6ZS02 220 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 GDPD3Q7L5L3 318 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 TSEN54Q7Z6J9 526 aaKnown RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 ZNF584Q8IVC4 421 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ATG16L2Q8NAA4 619 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 SETD9Q8NE22 299 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 AKR7LQ8NHP1 331 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 FBLIM1Q8WUP2 373 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 POM121L2Q96KW2 1035 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 NMNAT3Q96T66 252 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 HCAR1Q9BXC0 346 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ZC4H2Q9NQZ6 224 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 IL20RAQ9UHF4 553 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 B9D1Q9UPM9 204 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 TPRKBQ9Y3C4 175 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 U3KQV3 271 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 CADP27708 2225 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ITPR3Q14573 2671 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 OTOGQ6ZRI0 2925 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 IGLV3-9A0A075B6K5 115 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 C17orf100A8MU93 164 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 A8MV72 311 aaPredicted RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 LEUTXA8MZ59 168 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 GPRIN2O60269 458 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ZNF254O75437 659 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 S100A6P06703 90 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 HIST1H1CP16403 213 aaKnown RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 GIFP27352 417 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 HLA-DMAP28067 261 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 GPR6P46095 362 aaPredicted RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 ZNF81P51508 661 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 MZT1Q08AG7 82 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 FHL1Q13642 323 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ENDOGQ14249 297 aaKnown RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 GGTLC2Q14390 218 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 TOR2AQ5JU69 321 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ELFN2Q5R3F8 820 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ZNF774Q6NX45 483 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 ZBTB46Q86UZ6 589 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 MYPOPQ86VE0 399 aaPredicted RBP7.44□□□□□ -1.22
USP3-208ENST00000558285 LNX2Q8N448 690 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 SLC7A6Q92536 515 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 RAB1CQ92928 201 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 PTP4A1Q93096 173 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 PITX2Q99697 317 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 WNT5BQ9H1J7 359 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 PPA2Q9H2U2 334 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 OR51B6Q9H340 312 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 OPA3Q9H6K4 179 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 SAP30LQ9HAJ7 183 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 EMC7Q9NPA0 242 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 YAE1D1Q9NRH1 226 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 GLS2Q9UI32 602 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 KCNS2Q9ULS6 477 aa7.44□□□□□ -1.22
USP3-208ENST00000558285 USF3Q68DE3 2245 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 MED13LQ71F56 2210 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 DCHS2Q6V1P9 2916 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 PLCE1Q9P212 2302 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 IGHV4-30-2A0A087WSY4 118 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 A0A0G2JMP0 313 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 SLC1A7O00341 560 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 LILRA1O75019 489 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 NDUFS7O75251 213 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 GASTP01350 101 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 ALPLP05186 524 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 HTR1AP08908 422 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 CCL2P13500 99 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 GRK5P34947 590 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 CDKN2AP42771 156 aaKnown RBP7.43□□□□□ -1.22
USP3-208ENST00000558285 ALDH3B1P43353 468 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 SLC25A1P53007 311 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 CSNK2BP67870 215 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 TMEM249Q2WGJ8 235 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 SPANXN2Q5MJ10 180 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 CLVS2Q5SYC1 327 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 FAM166AQ6J272 317 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 HIPK1Q86Z02 1210 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 CELF2-AS1Q8N7Q2 184 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 SDR9C7Q8NEX9 313 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 OR9Q2Q8NGE9 314 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 NDNFQ8TB73 568 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 KLF14Q8TD94 323 aaPredicted RBP7.43□□□□□ -1.22
USP3-208ENST00000558285 SNAPC3Q92966 411 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 RAB39BQ96DA2 213 aa7.43□□□□□ -1.22
USP3-208ENST00000558285 LGALS12Q96DT0 336 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms