RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 FAM71AQ8IYT1 594 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 LILRB4Q8NHJ6 448 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF461Q8TAF7 563 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 NDNFQ8TB73 568 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 CREB3L1Q96BA8 519 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 SEH1LQ96EE3 360 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 MSANTD3Q96H12 275 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 LINC00477Q96M19 166 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 RHOXF2Q9BQY4 288 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 CALN1Q9BXU9 219 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 MAP1LC3CQ9BXW4 147 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 PRRG3Q9BZD7 231 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 ISYNA1Q9NPH2 558 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 ADA2Q9NZK5 511 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 IFNKQ9P0W0 207 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 MARCOQ9UEW3 520 aaPredicted RBP2.39□□□□□ -2.03
SCFD1-221ENST00000556534 GGA2Q9UJY4 613 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 UBIAD1Q9Y5Z9 338 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 C2orf16Q68DN1 1984 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 TSPOAP1O95153 1857 aa2.39□□□□□ -2.03
SCFD1-221ENST00000556534 PIK3R4Q99570 1358 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 IGLV2-18A0A075B6J9 118 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 IGKV1D-17A0A075B6S4 117 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 A0A1W2PRF3 423 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 A0A1W2PRM7 423 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 ANKRD65E5RJM6 399 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 RBBP9O75884 186 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 IGKV1-17P01599 117 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 IGLV3-19P01714 112 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 FABP3P05413 133 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 ADRA2AP08913 450 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 HOXB8P17481 243 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-221ENST00000556534 CSNK1A1P48729 337 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 RAB7AP51149 207 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 UBE2E1P51965 193 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 SIGLEC14Q08ET2 396 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 DGCR6Q14129 220 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF266Q14584 549 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 PON2Q15165 354 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 FHOD3Q2V2M9 1422 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 PRMT9Q6P2P2 845 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 PLET1Q6UQ28 207 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 SHISA6Q6ZSJ9 500 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 MRPL55Q7Z7F7 128 aaKnown RBP2.38□□□□□ -2.03
SCFD1-221ENST00000556534 UNC93AQ86WB7 457 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 SNX31Q8N9S9 440 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 CHST4Q8NCG5 386 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 NOXO1Q8NFA2 376 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 OR10W1Q8NGF6 305 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 OR6Q1Q8NGQ2 317 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 LRRC29Q8WV35 223 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 OR8D1Q8WZ84 308 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 MRGPRFQ96AM1 343 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 GALNT14Q96FL9 552 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 UBE2E2Q96LR5 201 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 HINT2Q9BX68 163 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 ZDHHC4Q9NPG8 344 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 SLC39A1Q9NY26 324 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 ZNRD1Q9P1U0 126 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 RBMX2Q9Y388 322 aaKnown RBP2.38□□□□□ -2.03
SCFD1-221ENST00000556534 RFNGQ9Y644 331 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 PLA2R1Q13018 1463 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 PCDH11XQ9BZA7 1347 aa2.38□□□□□ -2.03
SCFD1-221ENST00000556534 JCADQ9P266 1359 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 CENPXA8MT69 81 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 RFXANKO14593 260 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 RBFOX2O43251 390 aaKnown RBP eCLIP2.37□□□□□ -2.03
SCFD1-221ENST00000556534 NMT2O60551 498 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 RDH16O75452 317 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 RP2O75695 350 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 GABARAPO95166 117 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 VAMP5O95183 116 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 NPPAP01160 153 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 CCL2P13500 99 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 IL32P24001 234 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 CD151P48509 253 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 PPP1CBP62140 327 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 YWHAEP62258 255 aaKnown RBP2.37□□□□□ -2.03
SCFD1-221ENST00000556534 RPS23P62266 143 aaKnown RBP2.37□□□□□ -2.03
SCFD1-221ENST00000556534 PAFAH1B2P68402 229 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 LOXL1Q08397 574 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-221ENST00000556534 PRPSAP1Q14558 356 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 GINS1Q14691 196 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 QPRTQ15274 297 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 CHRFAM7AQ494W8 412 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 APOBEC3HQ6NTF7 200 aaKnown RBP2.37□□□□□ -2.03
SCFD1-221ENST00000556534 SLC25A34Q6PIV7 304 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 CEMP1Q6PRD7 247 aaPredicted RBP2.37□□□□□ -2.03
SCFD1-221ENST00000556534 ARL9Q6T311 187 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 PID1Q7Z2X4 250 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 CBR4Q8N4T8 237 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 FAM131CQ96AQ9 280 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 SGTBQ96EQ0 304 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF681Q96N22 645 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 SCGB3A2Q96PL1 93 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 GPR21Q99679 349 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF302Q9NR11 478 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 STMN3Q9NZ72 180 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 SLC17A7Q9P2U7 560 aa2.37□□□□□ -2.03
SCFD1-221ENST00000556534 ZNF229Q9UJW7 825 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms