RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 MEPCEQ7L2J0 689 aaKnown RBP9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 C19orf18Q8NEA5 215 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM163Q8TC26 289 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 PPP1R14AQ96A00 147 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 SPSB4Q96A44 273 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 TIMD4Q96H15 378 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 LYZL4Q96KX0 146 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 GAL3ST1Q99999 423 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 TEX12Q9BXU0 123 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 BEX2Q9BXY8 128 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 GABARAPL3Q9BY60 117 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 SHARPINQ9H0F6 387 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 UFSP2Q9NUQ7 469 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 HIF1ANQ9NWT6 349 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 LAMP5Q9UJQ1 280 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 LRP12Q9Y561 859 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 NPTNQ9Y639 398 aa9.75□□□□□ -0.85
CCDC88C-208ENST00000554165 C3orf80F5H4A9 247 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 PLPP2O43688 288 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 ALPLP05186 524 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 MSMBP08118 114 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 TNFRSF1AP19438 455 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 ZFP36P26651 326 aaKnown RBP9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 GSK3AP49840 483 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 SEC61A1P61619 476 aaKnown RBP9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM3AP98173 230 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 SRSF2Q01130 221 aaKnown RBP9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 OR8G1Q15617 311 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 KRTAP21-3Q3LHN1 58 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 CBR4Q8N4T8 237 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 ZNF454Q8N9F8 522 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 REEP6Q96HR9 211 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 PGAM5Q96HS1 289 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 SLC29A1Q99808 456 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 YIPF3Q9GZM5 350 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 TOR3AQ9H497 397 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 S100A14Q9HCY8 104 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM160Q9NX00 188 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 AASSQ9UDR5 926 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 CDC42EP3Q9UKI2 254 aa9.74□□□□□ -0.85
CCDC88C-208ENST00000554165 hCG_38984A0A1B0GV85 526 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 XRCC2O43543 280 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM20BO75063 409 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 AVPP01185 164 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 ACKR3P25106 362 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 SRP9P49458 86 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 RAD23AP54725 363 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 DVL1P1P54792 670 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 BTG1P62324 171 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 LCN2P80188 198 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 SLC3A1Q07837 685 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 MFGE8Q08431 387 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 TIGD6Q17RP2 521 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 ZFP1Q6P2D0 407 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 PLEKHG7Q6ZR37 379 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 C1orf229Q6ZS94 237 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 ZNF826PQ6ZT77 177 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 SSX6Q7RTT6 188 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 KRT77Q7Z794 578 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 LRRC28Q86X40 367 aaPredicted RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 OR8B12Q8NGG6 310 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM186Q96B77 213 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 MBOAT4Q96T53 435 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 CNN2Q99439 309 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 TBX5Q99593 518 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 MDFIQ99750 246 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 APOL4Q9BPW4 351 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 RBM4BQ9BQ04 359 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 ADAT1Q9BUB4 502 aaKnown RBP9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 ADGRL4Q9HBW9 690 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 RHBDD3Q9Y3P4 386 aa9.73□□□□□ -0.85
CCDC88C-208ENST00000554165 CUBNO60494 3623 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 ANKRD65E5RJM6 399 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 PNPP00491 289 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 GRPP07492 148 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM157CP0CG43 387 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 CD200P41217 278 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 DMRTC1Q5HYR2 192 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 LCN1P1Q5VSP4 162 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 NXNL2Q5VZ03 156 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 FAHD2BQ6P2I3 314 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 PEG10Q86TG7 708 aaKnown RBP9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 WDR86Q86TI4 376 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 GLCCI1Q86VQ1 547 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 SLC35F2Q8IXU6 374 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 BOLLQ8N9W6 283 aaKnown RBP9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 DEFB108BQ8NET1 73 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 OR52H1Q8NGJ2 320 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 OR51F2Q8NH61 342 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 EME1Q96AY2 570 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 FAHD2AQ96GK7 314 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 OR8B4Q96RC9 309 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 PRRG3Q9BZD7 231 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 OR10A2Q9H208 303 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 METTL17Q9H7H0 456 aaPredicted RBP9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 TMEM165Q9HC07 324 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 G6PC2Q9NQR9 355 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 FAM206AQ9NX38 181 aa9.72□□□□□ -0.85
CCDC88C-208ENST00000554165 USE1Q9NZ43 259 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms