RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 LPAR3Q9UBY5 353 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 IKZF2Q9UKS7 526 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 PPP1R3CQ9UQK1 317 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 PCDHGB1Q9Y5G3 927 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 GMPPBQ9Y5P6 360 aa12.19□□□□□ -0.46
CCDC88C-207ENST00000554051 MTORP42345 2549 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 hCG_38984A0A1B0GV85 526 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 A8MV72 311 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 E9PQ18 207 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 LILRA1O75019 489 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 FSTL3O95633 263 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 KRT8P05787 483 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 IGHV4-31P0DP07 118 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 SLC2A1P11166 492 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 ANPEPP15144 967 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 ATP6V1B1P15313 513 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 COL8A2P25067 703 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 POLR2IP36954 125 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 MMP16P51512 607 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OR8G1Q15617 311 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OR8B8Q15620 311 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 TRIP10Q15642 601 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OCLNQ16625 522 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 FAM166AQ6J272 317 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF322Q6U7Q0 402 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 LRRN1Q6UXK5 716 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 FAM220AQ7Z4H9 259 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 NAA40Q86UY6 237 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 MUC20Q8N307 709 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 SPICQ8N5J4 248 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OR10AD1Q8NGE0 317 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OR56B2PQ8NGI1 322 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OR51G2Q8NGK0 314 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 OR2AE1Q8NHA4 323 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 ITLN1Q8WWA0 313 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 CCL17Q92583 94 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 MRPL48Q96GC5 212 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 C1orf159Q96HA4 380 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 C14orf119Q9NWQ9 140 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 KCNS2Q9ULS6 477 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 KLHDC2Q9Y2U9 406 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 HIVEP2P31629 2446 aa12.18□□□□□ -0.46
CCDC88C-207ENST00000554051 A0A0U1RQV5 110 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 TMEM269A0A1B0GVZ9 245 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 B4DSR2 109 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 LYNX1G3V0Z9 82 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 MLNRO43193 412 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 LYNX1P0DP58 116 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 IRF2P14316 349 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 ZNF16P17020 682 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 GNALP38405 381 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 MTNR1AP48039 350 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 CDH15P55291 814 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 CXCR4P61073 352 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 TMEM155Q4W5P6 130 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 LINC01356Q8N9X3 169 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 OR11L1Q8NGX0 322 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 MBOAT4Q96T53 435 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 FAM206AQ9NX38 181 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 NUFIP1Q9UHK0 495 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 WIPI2Q9Y4P8 454 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 N6AMT1Q9Y5N5 214 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 NPTNQ9Y639 398 aa12.17□□□□□ -0.46
CCDC88C-207ENST00000554051 ANXA2P2A6NMY6 339 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 SLC16A6O15403 523 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 SULT1C4O75897 302 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 PTBP3O95758 552 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 HNF1AP20823 631 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 FAM3AP98173 230 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 IL5RAQ01344 420 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 GFOD2Q3B7J2 385 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 ZIK1Q3SY52 487 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 ZBTB37Q5TC79 503 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 EGFL6Q8IUX8 553 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 TEX29Q8N6K0 151 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 SETD9Q8NE22 299 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 OR10H4Q8NGA5 316 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 OR8B12Q8NGG6 310 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 OR8S1Q8NH09 359 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 CLDND2Q8NHS1 167 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 Q8TCH9 128 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 GAL3ST1Q99999 423 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 FN3KRPQ9HA64 309 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 GCM1Q9NP62 436 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 TRIM36Q9NQ86 728 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 YAE1D1Q9NRH1 226 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 COPS3Q9UNS2 423 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 MPC1Q9Y5U8 109 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 R4GMQ9 66 aa12.16□□□□□ -0.46
CCDC88C-207ENST00000554051 LOC100289279A0A1B0GTE1 492 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 LOC100130705A0A1B0GUX0 176 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 ISPDA4D126 451 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 LRP5LA4QPB2 252 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 F5H5P2 479 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 LOC110117498-PIK3R3F6TDL0 507 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 MTRF1O75570 445 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 CA6P23280 308 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 MDH2P40926 338 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 GSK3AP49840 483 aa12.15□□□□□ -0.46
CCDC88C-207ENST00000554051 BTG1P62324 171 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms