RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FUT5Q11128 374 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 POU4F2Q12837 409 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ALKBH1Q13686 389 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 EXOSC7Q15024 291 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ELAVL1Q15717 326 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 FHL5Q5TD97 284 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ABHD17BQ5VST6 288 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM244Q5VVB8 128 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 RPL22L1Q6P5R6 122 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 UNQ9370/PRO34162Q6UXP9 181 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 GDF7Q7Z4P5 450 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 DMRTC2Q8IXT2 367 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SLC43A2Q8N370 569 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 CISD2Q8N5K1 135 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SLC16A11Q8NCK7 471 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SDR9C7Q8NEX9 313 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR10H5Q8NGA6 315 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR5AP2Q8NGF4 316 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR10R2Q8NGX6 335 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 AKR7LQ8NHP1 331 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SLC2A12Q8TD20 617 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ADAMTS15Q8TE58 950 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 PPP1R1CQ8WVI7 109 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 HAS2Q92819 552 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SNRNP40Q96DI7 357 aaKnown RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 RAB3CQ96E17 227 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 PELI1Q96FA3 418 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 PIK3IP1Q96FE7 263 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SLC35A4Q96G79 324 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 TMEM68Q96MH6 324 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR7D2Q96RA2 312 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OCSTAMPQ9BR26 566 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 RSRP1Q9BUV0 290 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ACTRT3Q9BYD9 372 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 OR8D2Q9GZM6 311 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 TSPAN10Q9H1Z9 355 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 RHOFQ9HBH0 211 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 CMC2Q9NRP2 79 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 KLHL28Q9NXS3 571 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 ASH2LQ9UBL3 628 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 C19orf53Q9UNZ5 99 aaPredicted RBP6.82□□□□□ -1.32
LIMA1-216ENST00000552909 NTNG1Q9Y2I2 539 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 EML6Q6ZMW3 1958 aa6.82□□□□□ -1.32
LIMA1-216ENST00000552909 SETXQ7Z333 2677 aaKnown RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 TRBV11-1A0A0K0K1C0 115 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 A0A1B0GWJ7 208 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RIIAD1A6NNX1 92 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PIN1P1O15428 100 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 GPRIN2O60269 458 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PPP1R3DO95685 299 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CD74P04233 296 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CD34P28906 385 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RBM34P42696 430 aaKnown RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RBP2P50120 134 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 TNFSF10P50591 281 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 LIPNQ5VXI9 398 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SPINK14Q6IE38 97 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 MFSD12Q6NUT3 480 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 TMED4Q7Z7H5 227 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RPS19BP1Q86WX3 136 aaKnown RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 VRK2Q86Y07 508 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 BAP18Q8IXM2 172 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SYS1Q8N2H4 156 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RFLNBQ8N5W9 214 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF614Q8N883 585 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF383Q8NA42 475 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SLC30A7Q8NEW0 376 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 OR52R1Q8NGF1 315 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 OR1N1Q8NGS0 311 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CPT1CQ8TCG5 803 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CTHRC1Q96CG8 243 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RHOVQ96L33 236 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 HS6ST2Q96MM7 605 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SIGLEC12Q96PQ1 595 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 MCHR1Q99705 422 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SSX3Q99909 188 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 PDCD1LG2Q9BQ51 273 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 HES7Q9BYE0 225 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 DEFB126Q9BYW3 111 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 LAT2Q9GZY6 243 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CHMP1AQ9HD42 196 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 GFOD1Q9NXC2 390 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 HAO2Q9NYQ3 351 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 NBPF19A0A087WUL8 3843 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 A0A087WV62 115 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 LOC390937A0A1W2PQ73 354 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 DUXAA6NLW8 204 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 F8VVB4 439 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 F8VWA3 439 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 RNASEK-C17orf49H0YIS7 233 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 J3QKU1 62 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 SMAD9O15198 467 aaKnown RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 MAGEB4O15481 346 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 XRCC3O43542 346 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 ZNF354AO60765 605 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 WISP2O76076 250 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 MELTFP08582 738 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 TMIGD3P0DMS9 266 aaPredicted RBP6.81□□□□□ -1.32
LIMA1-216ENST00000552909 CLUP10909 449 aa6.81□□□□□ -1.32
LIMA1-216ENST00000552909 NDUFB7P17568 137 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms