RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 RRADP55042 308 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CLDN15P56746 228 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 FXYD4P59646 89 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 Q0VFX4 171 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 CAMK2BQ13554 666 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MFSD13AQ14CX5 517 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ISXQ2M1V0 245 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF385CQ66K41 422 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TMEM17Q86X19 198 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 LIX1LQ8IVB5 337 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MISPQ8IVT2 679 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 UBALD2Q8IYN6 164 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 OR2Y1Q8NGV0 311 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MARCH1Q8TCQ1 289 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 HAVCR2Q8TDQ0 301 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ST8SIA4Q92187 359 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ARHGAP5-AS1Q96IT6 56 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 OXGR1Q96P68 337 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ACTR6Q9GZN1 396 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 SLC6A15Q9H2J7 730 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 NIPAL2Q9H841 368 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 ZC4H2Q9NQZ6 224 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 PRMT8Q9NR22 394 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 MTFP1Q9UDX5 166 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 FBXO9Q9UK97 447 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-215ENST00000552823 KLK13Q9UKR3 277 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 TCFL5Q9UL49 500 aa4.94□□□□□ -1.62
LIMA1-215ENST00000552823 DMXL1Q9Y485 3027 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZFHX4Q86UP3 3567 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 CCDC163A0A0D9SF12 145 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 TMEM82A0PJX8 343 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 DHHO43323 396 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ICMTO60725 284 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 MPC2O95563 127 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 HLA-AP01891 365 aaKnown RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 HOXB5P09067 269 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 CD79AP11912 226 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 IL32P24001 234 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 CD96P40200 585 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 OR3A3P47888 321 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 OR3A2P47893 321 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 RAB14P61106 215 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 SLC35A1P78382 337 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 CEACAM16Q2WEN9 425 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ACER2Q5QJU3 275 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ADGRE4PQ86SQ3 457 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 TCTE3Q8IZS6 198 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 GPR137CQ8N3F9 429 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF680Q8NEM1 530 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 STEAP2Q8NFT2 490 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 FGFBP3Q8TAT2 258 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 LIPHQ8WWY8 451 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZC3HAV1LQ96H79 300 aaKnown RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 NARS2Q96I59 477 aaKnown RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 LRFN5Q96NI6 719 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 GPHA2Q96T91 129 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 PAPOLGQ9BWT3 736 aaKnown RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 TGIF2Q9GZN2 237 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 OR2S2Q9NQN1 319 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 DEPPQ9NTK1 212 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 FAM86C1Q9NVL1 165 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 RDH8Q9NYR8 311 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF629Q9UEG4 869 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 CYB5R1Q9UHQ9 305 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZGRF1Q86YA3 2104 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ARGFXA6NJG6 315 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF208O43345 1280 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 TNFSF15O95150 251 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 HLA-HP01893 362 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 PGA4P0DJD7 388 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 PGA3P0DJD8 388 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF32P17041 273 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ACHEP22303 614 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 CYB561P49447 251 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 AKR1C2P52895 323 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 MTCP1P56278 107 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 PMP22Q01453 160 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 AKR1C1Q04828 323 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 EXOSC2Q13868 293 aaKnown RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 OPCMLQ14982 345 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 SNAI3Q3KNW1 292 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 SPATA46Q5T0L3 261 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 THEM4Q5T1C6 240 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 METTL11BQ5VVY1 283 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 C6orf15Q6UXA7 325 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 C6orf201Q7Z4U5 140 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 SLC43A2Q8N370 569 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF454Q8N9F8 522 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ADAD2Q8NCV1 583 aaKnown RBP4.93□□□□□ -1.62
LIMA1-215ENST00000552823 OR6M1Q8NGM8 313 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 NEK7Q8TDX7 302 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 RNF133Q8WVZ7 376 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 EVA1AQ9H8M9 152 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 PCDHGA1Q9Y5H4 931 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF318Q5VUA4 2279 aa4.93□□□□□ -1.62
LIMA1-215ENST00000552823 IGLV3-12A0A075B6K2 115 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 M0R135 149 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 NDUFB6O95139 128 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 IGF2P01344 180 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 RAF1P04049 648 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms