RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 Q8TCH9 128 aa13.65□□□□□ -0.22
VPS29-207ENST00000549970 C1orf21Q9H246 121 aa13.65□□□□□ -0.22
VPS29-207ENST00000549970 NTN4Q9HB63 628 aa13.65□□□□□ -0.22
VPS29-207ENST00000549970 IGHV3OR16-10A0A075B7F0 116 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 IGHV2-70DA0A0C4DH43 119 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 GNGT2O14610 69 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 GMDSO60547 372 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 FSTL3O95633 263 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 ANXA2P07355 339 aaKnown RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 POU1F1P28069 291 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 HSD11B1P28845 292 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 GRK5P34947 590 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 SLC15A1P46059 708 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 PITPNBP48739 271 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 CX3CR1P49238 355 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 UBA52P62987 128 aaKnown RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 GRB2P62993 217 aaKnown RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 PAX2Q02962 417 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 GK3PQ14409 553 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 CD300LDQ6UXZ3 194 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 DCDC5Q6ZRR9 648 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 DPY19L4Q7Z388 723 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 TMEM179BQ7Z7N9 219 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 BCL6BQ8N143 479 aaPredicted RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 BOLLQ8N9W6 283 aaKnown RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 CANT1Q8WVQ1 401 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 RAB40AQ8WXH6 277 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 INTS14Q96SY0 518 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 FN3KRPQ9HA64 309 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 MRPL15Q9P015 296 aaKnown RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 PDP1Q9P0J1 537 aaPredicted RBP13.64□□□□□ -0.23
VPS29-207ENST00000549970 RNF7Q9UBF6 113 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 CLN8Q9UBY8 286 aa13.64□□□□□ -0.23
VPS29-207ENST00000549970 TMEM89A2RUT3 159 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 AQP12BA6NM10 295 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 XRCC2O43543 280 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 GSTT1P30711 240 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 TIGD6Q17RP2 521 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 SFRP4Q6FHJ7 346 aaPredicted RBP13.63□□□□□ -0.23
VPS29-207ENST00000549970 LRRN1Q6UXK5 716 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 AQP12AQ8IXF9 295 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 DUX5Q96PT3 197 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 MS4A7Q9GZW8 240 aaPredicted RBP13.63□□□□□ -0.23
VPS29-207ENST00000549970 OR51V1Q9H2C8 321 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 MMADHCQ9H3L0 296 aaPredicted RBP13.63□□□□□ -0.23
VPS29-207ENST00000549970 OPA3Q9H6K4 179 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 DNAJC27Q9NZQ0 273 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 TENM1Q9UKZ4 2725 aa13.63□□□□□ -0.23
VPS29-207ENST00000549970 ARRDC5A6NEK1 342 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 A6NLC8 198 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 C3orf80F5H4A9 247 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 E2F6O75461 281 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 GLCEO94923 617 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 GRPP07492 148 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 IGHV4-38-2P0DP08 117 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 PAICSP22234 425 aaKnown RBP13.62□□□□□ -0.23
VPS29-207ENST00000549970 COMPP49747 757 aaPredicted RBP13.62□□□□□ -0.23
VPS29-207ENST00000549970 GINS1Q14691 196 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 OR8B8Q15620 311 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 WDR25Q64LD2 544 aaPredicted RBP13.62□□□□□ -0.23
VPS29-207ENST00000549970 DOK3Q7L591 496 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 SLC16A9Q7RTY1 509 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 HS3ST5Q8IZT8 346 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 PARP8Q8N3A8 854 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 C3orf56Q8N813 242 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 RNF133Q8WVZ7 376 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 SPSB4Q96A44 273 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 ZMYND19Q96E35 227 aaPredicted RBP13.62□□□□□ -0.23
VPS29-207ENST00000549970 AMELYQ99218 206 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 NUDT16L1Q9BRJ7 211 aaKnown RBP13.62□□□□□ -0.23
VPS29-207ENST00000549970 ABHD6Q9BV23 337 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 TOR3AQ9H497 397 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 C1orf123Q9NWV4 160 aa13.62□□□□□ -0.23
VPS29-207ENST00000549970 TRAV40A0A0B4J280 105 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.61□□□□□ -0.23
VPS29-207ENST00000549970 hCG_1807616A0A1W2PRN6 198 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 ANKRD30BLA7E2S9 258 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 LGALS8O00214 317 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 PHYHO14832 338 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 PTBP3O95758 552 aaKnown RBP13.61□□□□□ -0.23
VPS29-207ENST00000549970 PSMB10P40306 273 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 ZNF121P58317 390 aaPredicted RBP13.61□□□□□ -0.23
VPS29-207ENST00000549970 GFOD2Q3B7J2 385 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 PLBD1Q6P4A8 553 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 ZNF841Q6ZN19 808 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 ZNF826PQ6ZT77 177 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 FAM57BQ71RH2 274 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 SHFQ7M4L6 423 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 TRPM8Q7Z2W7 1104 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 SPATA24Q86W54 205 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 TIGD4Q8IY51 512 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 SPERTQ8NA61 448 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 PLPP7Q8NBV4 271 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 DACT3Q96B18 629 aaPredicted RBP13.61□□□□□ -0.23
VPS29-207ENST00000549970 REEP6Q96HR9 211 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 ZNF48Q96MX3 618 aaPredicted RBP13.61□□□□□ -0.23
VPS29-207ENST00000549970 TECTBQ96PL2 329 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 ZNF556Q9HAH1 456 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 BRD7Q9NPI1 651 aa13.61□□□□□ -0.23
VPS29-207ENST00000549970 NBEAL1Q6ZS30 2694 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms