RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SPSB4Q96A44 273 aa18.15■□□□□ 0.5
VPS29-206ENST00000549578 HAVCR1Q96D42 359 aa18.15■□□□□ 0.5
VPS29-206ENST00000549578 REPIN1Q9BWE0 567 aaKnown RBP18.15■□□□□ 0.5
VPS29-206ENST00000549578 DSCAMO60469 2012 aa18.15■□□□□ 0.5
VPS29-206ENST00000549578 A0A0U1RQV5 110 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 B9A039 149 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 IGHV3-13P01766 116 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 SELENOVP59797 346 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 SWI5Q1ZZU3 235 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 KCTD21Q4G0X4 260 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 DTX2Q86UW9 622 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 COMMD2Q86X83 199 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 OR5M11Q96RB7 305 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 RGCCQ9H4X1 137 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 GPR84Q9NQS5 396 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 CBLN4Q9NTU7 201 aa18.14■□□□□ 0.49
VPS29-206ENST00000549578 PURGQ9UJV8 347 aaKnown RBP18.14■□□□□ 0.49
VPS29-206ENST00000549578 LSM2Q9Y333 95 aaKnown RBP18.14■□□□□ 0.49
VPS29-206ENST00000549578 P2RY10O00398 339 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 TIMM8AO60220 97 aaPredicted RBP18.13■□□□□ 0.49
VPS29-206ENST00000549578 FAM3AP98173 230 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 MRPL28Q13084 256 aaKnown RBP18.13■□□□□ 0.49
VPS29-206ENST00000549578 ALKBH1Q13686 389 aaKnown RBP18.13■□□□□ 0.49
VPS29-206ENST00000549578 OR5AS1Q8N127 324 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 TRAF4Q9BUZ4 470 aaPredicted RBP18.13■□□□□ 0.49
VPS29-206ENST00000549578 TRIM36Q9NQ86 728 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 TAAR3PQ9P1P4 343 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 ST6GALNAC2Q9UJ37 374 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 SIRT4Q9Y6E7 314 aaPredicted RBP18.13■□□□□ 0.49
VPS29-206ENST00000549578 POLQO75417 2590 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 hCG_38984A0A1B0GV85 526 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 TRIM64A6NGJ6 449 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 H3BSH0 61 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 IGLV3-1P01715 115 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 KITLGP21583 273 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 ALDH3B1P43353 468 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 TGM4P49221 684 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 EVX1P49640 407 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 MED22Q15528 200 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 C11orf71Q6IPW1 123 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 RDH10Q8IZV5 341 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 ZFP41Q8N8Y5 198 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 BHLHE23Q8NDY6 225 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 FAM71F1Q96KD3 344 aaPredicted RBP18.13■□□□□ 0.49
VPS29-206ENST00000549578 OPA3Q9H6K4 179 aa18.13■□□□□ 0.49
VPS29-206ENST00000549578 GGT3PA6NGU5 568 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 OR4C45A6NMZ5 311 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 MRPS14O60783 128 aaKnown RBP18.12■□□□□ 0.49
VPS29-206ENST00000549578 LILRA1O75019 489 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 TNFAIP8O95379 198 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 CFL1P23528 166 aaKnown RBP18.12■□□□□ 0.49
VPS29-206ENST00000549578 CCR9P51686 369 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 SNRPD2P62316 118 aaKnown RBP18.12■□□□□ 0.49
VPS29-206ENST00000549578 CDK5R1Q15078 307 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 SPHARQ15513 63 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 NKPD1Q17RQ9 610 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 ZNF773Q6PK81 442 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 PAMR1Q6UXH9 720 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 SPARTQ8N0X7 666 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 HAVCR2Q8TDQ0 301 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 GTF3AQ92664 365 aaKnown RBP18.12■□□□□ 0.49
VPS29-206ENST00000549578 CCL19Q99731 98 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 ZNF391Q9UJN7 358 aa18.12■□□□□ 0.49
VPS29-206ENST00000549578 ITPR2Q14571 2701 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 ARFGEF3Q5TH69 2177 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 TRBV2A0A0J9YWF9 115 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 A0A1B0GTI1 187 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 PNMA8CA0A1B0GUJ8 204 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 CD300LBA8K4G0 201 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 GSK3AP49840 483 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 TBCEQ15813 527 aaPredicted RBP18.11■□□□□ 0.49
VPS29-206ENST00000549578 CCDC58Q4VC31 144 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 RPL22L1Q6P5R6 122 aaKnown RBP18.11■□□□□ 0.49
VPS29-206ENST00000549578 OR56B2PQ8NGI1 322 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 PDCD1LG2Q9BQ51 273 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 ACOT13Q9NPJ3 140 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 PLEKHA6Q9Y2H5 1048 aa18.11■□□□□ 0.49
VPS29-206ENST00000549578 LOC107986453A0A1B0GWG9 222 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 IQCF6A8MYZ5 107 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 M0R233 179 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 ZFPL1O95159 310 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 UBCP0CG48 685 aaKnown RBP18.1■□□□□ 0.49
VPS29-206ENST00000549578 NAT2P11245 290 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 SELEP16581 610 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 ACKR3P25106 362 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 MMP15P51511 669 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 EMX1Q04741 257 aaPredicted RBP18.1■□□□□ 0.49
VPS29-206ENST00000549578 TNK1Q13470 666 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 ZCCHC24Q8N2G6 241 aaKnown RBP18.1■□□□□ 0.49
VPS29-206ENST00000549578 ZNF676Q8N7Q3 588 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 IGFBPL1Q8WX77 278 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 LURAP1Q96LR2 239 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 CACNG6Q9BXT2 260 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 MSL2Q9HCI7 577 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 DYNLRB1Q9NP97 96 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 CSMD2Q7Z408 3487 aa18.1■□□□□ 0.49
VPS29-206ENST00000549578 OGG1O15527 345 aa18.09■□□□□ 0.49
VPS29-206ENST00000549578 CDKN1AP38936 164 aa18.09■□□□□ 0.49
VPS29-206ENST00000549578 SLC3A1Q07837 685 aa18.09■□□□□ 0.49
VPS29-206ENST00000549578 OR8B8Q15620 311 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms