RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 FSTP19883 344 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 OR1C1Q15619 314 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 GLIPR1L1Q6UWM5 242 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 GALNTL5Q7Z4T8 443 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 SULF2Q8IWU5 870 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 OR5D14Q8NGL3 314 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 MAFIPQ8WZ33 124 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 CMTM3Q96MX0 182 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 NAA11Q9BSU3 229 aaPredicted RBP9.74□□□□□ -0.85
CUX1-212ENST00000547394 ELL3Q9HB65 397 aaPredicted RBP9.74□□□□□ -0.85
CUX1-212ENST00000547394 TMEM9BQ9NQ34 198 aa9.74□□□□□ -0.85
CUX1-212ENST00000547394 TNFRSF10AO00220 468 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 ECDO95905 644 aaPredicted RBP9.73□□□□□ -0.85
CUX1-212ENST00000547394 ZNF883P0CG24 379 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 ICAM2P13598 275 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 AP3S2P59780 193 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 HACD4Q5VWC8 232 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 AAED1Q7RTV5 226 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 OR2T35Q8NGX2 323 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 SORCS2Q96PQ0 1159 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 FAM86C1Q9NVL1 165 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 TMA7Q9Y2S6 64 aaKnown RBP9.73□□□□□ -0.85
CUX1-212ENST00000547394 A0A0A6YYD4 124 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 ARGFXA6NJG6 315 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 RAB27BO00194 218 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 SOCS1O15524 211 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 SULT1B1O43704 296 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 RAC3P60763 192 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 CEACAM16Q2WEN9 425 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 STEAP1BQ6NZ63 245 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 FJX1Q86VR8 437 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 LYPD6Q86Y78 171 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 GABRG1Q8N1C3 465 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 TMEM54Q969K7 222 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 NIPAL2Q9H841 368 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 PARD6AQ9NPB6 346 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 ZNF581Q9P0T4 197 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 MGAT4CQ9UBM8 478 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 SLC23A1Q9UHI7 598 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 FOXD3Q9UJU5 478 aaPredicted RBP9.73□□□□□ -0.85
CUX1-212ENST00000547394 ZNF716A6NP11 495 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 ICMTO60725 284 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 WISP2O76076 250 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 AMY2AP04746 511 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 CCNOP22674 350 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 CDNFQ49AH0 187 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 CLEC1AQ8NC01 280 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 OR2M7Q8NG81 312 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 OR2V1Q8NHB1 315 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 FNDC9Q8TBE3 224 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 ZNF431Q8TF32 576 aaPredicted RBP9.73□□□□□ -0.85
CUX1-212ENST00000547394 DDA1Q9BW61 102 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 CALHM2Q9HA72 323 aa9.73□□□□□ -0.85
CUX1-212ENST00000547394 M0R135 149 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 LDLRAD4O15165 306 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 CRTAPO75718 401 aaPredicted RBP9.72□□□□□ -0.85
CUX1-212ENST00000547394 IGHEP01854 428 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ANXA3P12429 323 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ZNF32P17041 273 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 TRIP6Q15654 476 aaKnown RBP9.72□□□□□ -0.85
CUX1-212ENST00000547394 UBE2V2Q15819 145 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 NLRC3Q7RTR2 1065 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 TRAPPC6BQ86SZ2 158 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 MEIOBQ8N635 442 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ZFAND1Q8TCF1 268 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 GPX8Q8TED1 209 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ZNF799Q96GE5 643 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 MRI1Q9BV20 369 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 COPZ2Q9P299 210 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 PIGLQ9Y2B2 252 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 MRPS28Q9Y2Q9 187 aaKnown RBP9.72□□□□□ -0.85
CUX1-212ENST00000547394 ZNF318Q5VUA4 2279 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ANKRD11Q6UB99 2663 aaPredicted RBP9.72□□□□□ -0.85
CUX1-212ENST00000547394 NDUFB6O95139 128 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 RAB3DO95716 219 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ERP29P30040 261 aaKnown RBP9.72□□□□□ -0.85
CUX1-212ENST00000547394 PMP22Q01453 160 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 PLGLB1Q02325 96 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 TNK1Q13470 666 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 ZNF528Q3MIS6 628 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 C1orf100Q5SVJ3 147 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 IDO2Q6ZQW0 420 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 C9orf62Q8N4C0 152 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 SLC22A24Q8N4F4 322 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 GJC3Q8NFK1 279 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 RADILQ96JH8 1075 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 UTP23Q9BRU9 249 aaKnown RBP9.72□□□□□ -0.85
CUX1-212ENST00000547394 DEFB127Q9H1M4 99 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 EXO5Q9H790 373 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 GPR173Q9NS66 373 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 LIPGQ9Y5X9 500 aa9.72□□□□□ -0.85
CUX1-212ENST00000547394 STMND1H3BQB6 276 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 ANGPTL7O43827 346 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 NOS1APO75052 506 aaPredicted RBP9.71□□□□□ -0.85
CUX1-212ENST00000547394 SULT1A3P0DMM9 295 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 SULT1A4P0DMN0 295 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 ACKR3P25106 362 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 C4orf46Q504U0 113 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 ELFN2Q5R3F8 820 aa9.71□□□□□ -0.85
CUX1-212ENST00000547394 LIN54Q6MZP7 749 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms