RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 NOP16Q9Y3C1 178 aaKnown RBP11.77□□□□□ -0.53
PTCH1-213ENST00000546820 SETXQ7Z333 2677 aaKnown RBP11.77□□□□□ -0.53
PTCH1-213ENST00000546820 CD300LBA8K4G0 201 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 IQCF6A8MYZ5 107 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 PTGES3LE9PB15 166 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 TPD52L2O43399 206 aaKnown RBP11.76□□□□□ -0.53
PTCH1-213ENST00000546820 XPNPEP2O43895 674 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 MTRF1O75570 445 aaKnown RBP11.76□□□□□ -0.53
PTCH1-213ENST00000546820 RPSAP08865 295 aaKnown RBP11.76□□□□□ -0.53
PTCH1-213ENST00000546820 NAT2P11245 290 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 MMP15P51511 669 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 GBX2P52951 348 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-213ENST00000546820 OR12D2P58182 307 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 GFOD2Q3B7J2 385 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 FAM209AQ5JX71 171 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 SHEQ5VZ18 495 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 LAIR2Q6ISS4 152 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 ELMOD2Q8IZ81 293 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 OR5AS1Q8N127 324 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 FTMTQ8N4E7 242 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 KLHL36Q8N4N3 616 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 C4orf36Q96KX1 117 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 EGLN1Q9GZT9 426 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 DECR2Q9NUI1 292 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 NKIRAS2Q9NYR9 191 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 ZNF319Q9P2F9 582 aa11.76□□□□□ -0.53
PTCH1-213ENST00000546820 ANKRD17O75179 2603 aaKnown RBP11.76□□□□□ -0.53
PTCH1-213ENST00000546820 NOTCH2Q04721 2471 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 NBPF19A0A087WUL8 3843 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 SLC1A7O00341 560 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 SPRY3O43610 288 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 SRSF10O75494 262 aaKnown RBP11.75□□□□□ -0.53
PTCH1-213ENST00000546820 PNPP00491 289 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 HTR1AP08908 422 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 ATP6V1B1P15313 513 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 GSK3AP49840 483 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 ETV1P50549 477 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 FAM3AP98173 230 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 RBM48Q5RL73 367 aaKnown RBP11.75□□□□□ -0.53
PTCH1-213ENST00000546820 PRSS57Q6UWY2 283 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 AHSA2Q719I0 299 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 COMMD2Q86X83 199 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 ZCCHC24Q8N2G6 241 aaKnown RBP11.75□□□□□ -0.53
PTCH1-213ENST00000546820 CSNK2A3Q8NEV1 391 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 OR8B12Q8NGG6 310 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 RORBQ92753 470 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 SORCS2Q96PQ0 1159 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 TPK1Q9H3S4 243 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 MSL2Q9HCI7 577 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 BLOC1S6Q9UL45 172 aa11.75□□□□□ -0.53
PTCH1-213ENST00000546820 ARFGEF3Q5TH69 2177 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 C5orf63A6NC05 138 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 ANKRD30BLA7E2S9 258 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 SSX4O60224 188 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 ADH4P08319 380 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 LIMS3P0CW19 117 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 LIMS4P0CW20 117 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 PSMB10P40306 273 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 MAP2K3P46734 347 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 CCR9P51686 369 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 DSCR9P59020 149 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 MFGE8Q08431 387 aaPredicted RBP11.74□□□□□ -0.53
PTCH1-213ENST00000546820 FDX2Q6P4F2 183 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 CATSPERDQ86XM0 798 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 KLBQ86Z14 1044 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 ZNF786Q8N393 782 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 SPERTQ8NA61 448 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 BHLHE23Q8NDY6 225 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 CCDC54Q8NEL0 328 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 OR2Z1Q8NG97 314 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 OR51E1Q8TCB6 317 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 PELI1Q96FA3 418 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 SLC30A2Q9BRI3 323 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 MYOZ1Q9NP98 299 aaPredicted RBP11.74□□□□□ -0.53
PTCH1-213ENST00000546820 G6PC2Q9NQR9 355 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 ACOXLQ9NUZ1 547 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 FKBP14Q9NWM8 211 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 MRPL15Q9P015 296 aaKnown RBP11.74□□□□□ -0.53
PTCH1-213ENST00000546820 ERGIC3Q9Y282 383 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 NAV2Q8IVL1 2488 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 POLQO75417 2590 aa11.74□□□□□ -0.53
PTCH1-213ENST00000546820 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.73□□□□□ -0.53
PTCH1-213ENST00000546820 hCG_38984A0A1B0GV85 526 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 LOC390937A0A1W2PQ73 354 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 CYSRT1A8MQ03 144 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 GMDSO60547 372 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 NDUFS7O75251 213 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 IGHV1-46P01743 117 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 IGHV4-39P01824 125 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 TTRP02766 147 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 CDK1P06493 297 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 CSF3P09919 207 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 ZNF12P17014 697 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 GNALP38405 381 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 CCL8P80075 99 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 TNFAIP6P98066 277 aaPredicted RBP11.73□□□□□ -0.53
PTCH1-213ENST00000546820 MZT1Q08AG7 82 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 TSTQ16762 297 aaKnown RBP11.73□□□□□ -0.53
PTCH1-213ENST00000546820 TMEM255AQ5JRV8 349 aa11.73□□□□□ -0.53
PTCH1-213ENST00000546820 TMEM244Q5VVB8 128 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms