RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 OR14K1Q8NGZ2 314 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 C20orf85Q9H1P6 137 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 PAQR5Q9NXK6 330 aaPredicted RBP12.72□□□□□ -0.37
CLIP1-216ENST00000541410 NUBP2Q9Y5Y2 271 aa12.72□□□□□ -0.37
CLIP1-216ENST00000541410 TMEM235A6NFC5 223 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 LDLRAD4O15165 306 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 H2AFB2P0C5Z0 115 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 VSIG8P0DPA2 414 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 RRAS2P62070 204 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-216ENST00000541410 PSG4Q00888 419 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 SLC10A1Q14973 349 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 DOK3Q7L591 496 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 SLC16A14Q7RTX9 510 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 MEIOBQ8N635 442 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 CPT1CQ8TCG5 803 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 GIMAP1Q8WWP7 306 aa12.71□□□□□ -0.37
CLIP1-216ENST00000541410 WIPF3A6NGB9 483 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 SYNGR3O43761 229 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 SYNGR4O95473 234 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 DHFRP00374 187 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 LIPCP11150 499 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 PRSS3P35030 304 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 MNDAP41218 407 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 HTR5AP47898 357 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 VEGFCP49767 419 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 LINC00303Q3SY05 128 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 GPER1Q99527 375 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 NICN1Q9BSH3 213 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 BANF2Q9H503 90 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 METTL17Q9H7H0 456 aaPredicted RBP12.71□□□□□ -0.38
CLIP1-216ENST00000541410 PIGLQ9Y2B2 252 aa12.71□□□□□ -0.38
CLIP1-216ENST00000541410 H7C417 338 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 TNFRSF10AO00220 468 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 ARPC1BO15143 372 aaKnown RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 LRP3O75074 770 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 ECDO95905 644 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 CD37P11049 281 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 GTF2F2P13984 249 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 CTSSP25774 331 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 FCN2Q15485 313 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF529Q6P280 563 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 GLIPR1L1Q6UWM5 242 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 CHST4Q8NCG5 386 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 TMEM104Q8NE00 496 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 CAPSLQ8WWF8 208 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 AKAP1Q92667 903 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 SPTSSAQ969W0 71 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 SLCO5A1Q9H2Y9 848 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 C12orf49Q9H741 205 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 SLC17A5Q9NRA2 495 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 RYDENQ9NUL5 291 aaKnown RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 MTFP1Q9UDX5 166 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 DSPP15924 2871 aaKnown RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 LCATP04180 440 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 CCL2P13500 99 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 GABRA1P14867 456 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 OTX1P32242 354 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 ZFP62Q8NB50 900 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 OR4C16Q8NGL9 310 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 OR1F12Q8NHA8 337 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 PIGTQ969N2 578 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 SGK3Q96BR1 496 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 SPRR3Q9UBC9 169 aa12.7□□□□□ -0.38
CLIP1-216ENST00000541410 MCTS1Q9ULC4 181 aaKnown RBP12.7□□□□□ -0.38
CLIP1-216ENST00000541410 LINC01387J3KSC0 135 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 HPXP02790 462 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 CD3DP04234 171 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 CST2P09228 141 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 PSMB1P20618 241 aaKnown RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 CCL1P22362 96 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 CCNOP22674 350 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 CRYGSP22914 178 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 CD82P27701 267 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 RRADP55042 308 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 AP3S2P59780 193 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 BTG1P62324 171 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 MRPS10P82664 201 aaKnown RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 ARF1P84077 181 aaKnown RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 RAB35Q15286 201 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 UBE2V2Q15819 145 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 ST3GAL2Q16842 350 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 GSG1Q2KHT4 349 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 DEFB109BQ30KR1 87 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 BTN2A1Q7KYR7 527 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 OR56B4Q8NH76 319 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 HAS2Q92819 552 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 FOXRED1Q96CU9 486 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 SEH1LQ96EE3 360 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 SCMH1Q96GD3 660 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 WNT5BQ9H1J7 359 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 PLSCR3Q9NRY6 295 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 RABL2AQ9UBK7 228 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 RABL2BQ9UNT1 228 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 MRPS28Q9Y2Q9 187 aaKnown RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 DHRS3O75911 302 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 TGM6O95932 706 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 GSTT2BP0CG30 244 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 ACKR3P25106 362 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 TNFSF10P50591 281 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 SLC22A6Q4U2R8 563 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms