RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GMDSO60547 372 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 APOC1P02654 83 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 HNF1AP20823 631 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 CA6P23280 308 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 ZFP36P26651 326 aaKnown RBP11.92□□□□□ -0.5
USP28-209ENST00000540925 NAA10P41227 235 aaPredicted RBP11.92□□□□□ -0.5
USP28-209ENST00000540925 ZNF121P58317 390 aaPredicted RBP11.92□□□□□ -0.5
USP28-209ENST00000540925 FAM3AP98173 230 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 CCDC121Q6ZUS5 278 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 MOGAT3Q86VF5 341 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 OR56B2PQ8NGI1 322 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 OR52H1Q8NGJ2 320 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 SPRYD4Q8WW59 207 aaPredicted RBP11.92□□□□□ -0.5
USP28-209ENST00000540925 ERGIC1Q969X5 290 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 OSBPL10Q9BXB5 764 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 YIPF3Q9GZM5 350 aa11.92□□□□□ -0.5
USP28-209ENST00000540925 PATZ1Q9HBE1 687 aaKnown RBP11.92□□□□□ -0.5
USP28-209ENST00000540925 PPIAL4EA0A075B759 164 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 PPIAL4CA0A0B4J2A2 164 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 A8MXK9 166 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 PPIAL4DF5H284 164 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 M0R129 80 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 AVPP01185 164 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 SBK2P0C263 348 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 PPIAL4FP0DN26 164 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 HSD11B1P28845 292 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 POLR2IP36954 125 aaKnown RBP11.91□□□□□ -0.5
USP28-209ENST00000540925 DDOSTP39656 456 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 MDH2P40926 338 aaKnown RBP11.91□□□□□ -0.5
USP28-209ENST00000540925 ROM1Q03395 351 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 KPNB1Q14974 876 aaKnown RBP11.91□□□□□ -0.5
USP28-209ENST00000540925 OR8B8Q15620 311 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 KRT74Q7RTS7 529 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 BCDIN3DQ7Z5W3 292 aaKnown RBP11.91□□□□□ -0.5
USP28-209ENST00000540925 KLBQ86Z14 1044 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 SPICQ8N5J4 248 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 PLPP7Q8NBV4 271 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 SPATA3Q8NHX4 192 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 TMEM163Q8TC26 289 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 PYDC1Q8WXC3 89 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 REEP6Q96HR9 211 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 TMPRSS13Q9BYE2 586 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 SEMA6AQ9H2E6 1030 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 SP140LQ9H930 580 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 TMEM165Q9HC07 324 aa11.91□□□□□ -0.5
USP28-209ENST00000540925 NOP16Q9Y3C1 178 aaKnown RBP11.91□□□□□ -0.5
USP28-209ENST00000540925 ARHGAP32A7KAX9 2087 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 IGHV3-64DA0A0J9YX35 117 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 ISPDA4D126 451 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 GGT3PA6NGU5 568 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 CYB5R3P00387 301 aaPredicted RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 PNPP00491 289 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 ANXA2P07355 339 aaKnown RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 H2BFMP0C1H6 154 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 CPT2P23786 658 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 HCCSP53701 268 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 PSMA6P60900 246 aaKnown RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 SEC61A1P61619 476 aaKnown RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 RPS7P62081 194 aaKnown RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 OR8G1Q15617 311 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 MPPED2Q15777 294 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 LCN1P1Q5VSP4 162 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 NXNL2Q5VZ03 156 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 DEGS2Q6QHC5 323 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 LRRN1Q6UXK5 716 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 FAM57BQ71RH2 274 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 MEPCEQ7L2J0 689 aaKnown RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 TCEANCQ8N8B7 351 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 THEM6Q8WUY1 208 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 DACT3Q96B18 629 aaPredicted RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 LYZL4Q96KX0 146 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 PKP2Q99959 881 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 ADAT1Q9BUB4 502 aaKnown RBP11.9□□□□□ -0.5
USP28-209ENST00000540925 PRRG3Q9BZD7 231 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 RGCCQ9H4X1 137 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 NIPAL2Q9H841 368 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 HAO2Q9NYQ3 351 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 DNAJC27Q9NZQ0 273 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 OPN4Q9UHM6 478 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 ENOPH1Q9UHY7 261 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 COPS3Q9UNS2 423 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 LRP12Q9Y561 859 aa11.9□□□□□ -0.5
USP28-209ENST00000540925 CEACAM18A8MTB9 384 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 J3QLI3 93 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 FAM20BO75063 409 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 FSHBP01225 129 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 IGLV3-1P01715 115 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 ALPLP05186 524 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 WNT2P09544 360 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 CFL1P23528 166 aaKnown RBP11.89□□□□□ -0.51
USP28-209ENST00000540925 GATA3P23771 443 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 DCTDP32321 178 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 GSK3AP49840 483 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 PAX2Q02962 417 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 TIGD6Q17RP2 521 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 ZNF404Q494X3 552 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 PRAMEF6Q5VXH4 476 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 MUC20Q8N307 709 aaPredicted RBP11.89□□□□□ -0.51
USP28-209ENST00000540925 KLHL36Q8N4N3 616 aa11.89□□□□□ -0.51
USP28-209ENST00000540925 RFLNBQ8N5W9 214 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms