RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 TP53I3Q53FA7 332 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 LIPKQ5VXJ0 399 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 RPL22L1Q6P5R6 122 aaKnown RBP11.13□□□□□ -0.63
CCDC42-202ENST00000539522 DEGS2Q6QHC5 323 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 FAM220AQ7Z4H9 259 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 ZNF679Q8IYX0 411 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 YIPF7Q8N8F6 280 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 OR1J1Q8NGS3 322 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 MRPL24Q96A35 216 aaKnown RBP11.13□□□□□ -0.63
CCDC42-202ENST00000539522 DCLRE1CQ96SD1 692 aaKnown RBP11.13□□□□□ -0.63
CCDC42-202ENST00000539522 MROQ9BYG7 248 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 ELOVL3Q9HB03 270 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 NDUFB11Q9NX14 153 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 FAM206AQ9NX38 181 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 ST6GALNAC2Q9UJ37 374 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 GNG8Q9UK08 70 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 POU2F3Q9UKI9 436 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 PLEKHA6Q9Y2H5 1048 aa11.13□□□□□ -0.63
CCDC42-202ENST00000539522 PLPP2O43688 288 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 GABARAPO95166 117 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 LALBAP00709 142 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 IGLV3-1P01715 115 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 CELP19835 753 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 GADD45AP24522 165 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 CX3CR1P49238 355 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 FABP6P51161 128 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 ZNF121P58317 390 aaPredicted RBP11.12□□□□□ -0.63
CCDC42-202ENST00000539522 GRB2P62993 217 aaKnown RBP11.12□□□□□ -0.63
CCDC42-202ENST00000539522 PSG7Q13046 419 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 TRAM1Q15629 374 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 CTF1Q16619 201 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 CNPY1Q3B7I2 92 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 GLYATL3Q5SZD4 288 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 ZNF544Q6NX49 715 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 DRAM2Q6UX65 266 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 SLC16A12Q6ZSM3 486 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 KRT77Q7Z794 578 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 ZCCHC24Q8N2G6 241 aaKnown RBP11.12□□□□□ -0.63
CCDC42-202ENST00000539522 MUC15Q8N387 334 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 OR2AE1Q8NHA4 323 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 KLF14Q8TD94 323 aaPredicted RBP11.12□□□□□ -0.63
CCDC42-202ENST00000539522 C12orf43Q96C57 262 aaKnown RBP11.12□□□□□ -0.63
CCDC42-202ENST00000539522 PELI1Q96FA3 418 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 LYZL4Q96KX0 146 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 SYT3Q9BQG1 590 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 NAA50Q9GZZ1 169 aaKnown RBP11.12□□□□□ -0.63
CCDC42-202ENST00000539522 PLK3Q9H4B4 646 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 G6PC2Q9NQR9 355 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 PTTG3PQ9NZH4 202 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 IKZF2Q9UKS7 526 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 SSR3Q9UNL2 185 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 LAMP3Q9UQV4 416 aa11.12□□□□□ -0.63
CCDC42-202ENST00000539522 E9PI62 339 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 H3BMQ9 156 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 SLC22A1O15245 554 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 NDUFS7O75251 213 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 HLA-DPB1P04440 258 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 H2BFMP0C1H6 154 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 GALP22466 123 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 GABRA5P31644 462 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 SERPINF1P36955 418 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 CRYBB2P43320 205 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 RAD52P43351 418 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 PSMA6P60900 246 aaKnown RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 ZNF92Q03936 586 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 HNRNPA0Q13151 305 aaKnown RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 GK2Q14410 553 aaPredicted RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 LIPNQ5VXI9 398 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 MBNL2Q5VZF2 373 aaKnown RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 DMKNQ6E0U4 476 aaPredicted RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 FDX2Q6P4F2 183 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 C20orf204Q6ZNR8 217 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 Q6ZR03 302 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 KRTAP1-3Q8IUG1 177 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 MS4A15Q8N5U1 240 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 SGK3Q96BR1 496 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 KCNS3Q9BQ31 491 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 BCL2L14Q9BZR8 327 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 OR51E2Q9H255 320 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 ACOXLQ9NUZ1 547 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 STUB1Q9UNE7 303 aa11.11□□□□□ -0.63
CCDC42-202ENST00000539522 SF3B6Q9Y3B4 125 aaKnown RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 SIRT4Q9Y6E7 314 aaPredicted RBP11.11□□□□□ -0.63
CCDC42-202ENST00000539522 TRBV2A0A0J9YWF9 115 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 TRDV1A0A1B0GX56 115 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 TRIM64BA6NI03 449 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 IGHV3-13P01766 116 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 LCATP04180 440 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 HSD11B1P28845 292 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 DCTDP32321 178 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 RBMXP38159 391 aaKnown RBP11.1□□□□□ -0.63
CCDC42-202ENST00000539522 CDKN1AP38936 164 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 MMP15P51511 669 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 RIDAP52758 137 aaKnown RBP11.1□□□□□ -0.63
CCDC42-202ENST00000539522 TPTEP56180 551 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 NANOS3P60323 173 aaKnown RBP11.1□□□□□ -0.63
CCDC42-202ENST00000539522 TAF13Q15543 124 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 SPRNQ5BIV9 151 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 RGS7BPQ6MZT1 257 aaPredicted RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms