RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 F5H5P2 479 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 SLC16A6O15403 523 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 GMDSO60547 372 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 IGLV3-1P01715 115 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 HLA-DPB1P04440 258 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 TNFRSF1AP19438 455 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 DDOSTP39656 456 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 CD200P41217 278 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 GATA4P43694 442 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 MMP16P51512 607 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 PSMA6P60900 246 aaKnown RBP10.95□□□□□ -0.66
VPS28-216ENST00000533806 KRT74Q7RTS7 529 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.95□□□□□ -0.66
VPS28-216ENST00000533806 SLC35F2Q8IXU6 374 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 FAM81AQ8TBF8 368 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 SPRYD4Q8WW59 207 aaPredicted RBP10.95□□□□□ -0.66
VPS28-216ENST00000533806 STMN2Q93045 179 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 POM121Q96HA1 1249 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 REEP6Q96HR9 211 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 LYZL4Q96KX0 146 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 SLC22A4Q9H015 551 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 RGCCQ9H4X1 137 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 TMEM106BQ9NUM4 274 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 FAM118AQ9NWS6 357 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 TREM2Q9NZC2 230 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 DNAJC27Q9NZQ0 273 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 ORC6Q9Y5N6 252 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 ABCA2Q9BZC7 2435 aa10.95□□□□□ -0.66
VPS28-216ENST00000533806 LOC100289279A0A1B0GTE1 492 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 J3QRE1 110 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 PSMD9O00233 223 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 TBX1O43435 398 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 ENTPD6O75354 484 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 BAG2O95816 211 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 ANXA2P07355 339 aaKnown RBP10.94□□□□□ -0.66
VPS28-216ENST00000533806 ANPEPP15144 967 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 CA6P23280 308 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 PMELP40967 661 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 GSK3AP49840 483 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 CDH15P55291 814 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 CXCR4P61073 352 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 MVKQ03426 396 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 POU4F2Q12837 409 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 OR8B8Q15620 311 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 ZNF181Q2M3W8 571 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 AVPI1Q5T686 147 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 ZNF322Q6U7Q0 402 aaPredicted RBP10.94□□□□□ -0.66
VPS28-216ENST00000533806 SSX6Q7RTT6 188 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 KRT77Q7Z794 578 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 KLBQ86Z14 1044 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 OR56B2PQ8NGI1 322 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 OR51G2Q8NGK0 314 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 RHOXF1Q8NHV9 184 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 RFKQ969G6 155 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 MROQ9BYG7 248 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 OR10A2Q9H208 303 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 YAE1D1Q9NRH1 226 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 TMEM160Q9NX00 188 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 MRM2Q9UI43 246 aaKnown RBP10.94□□□□□ -0.66
VPS28-216ENST00000533806 PPP1R3CQ9UQK1 317 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 N6AMT1Q9Y5N5 214 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 JMJD1CQ15652 2540 aa10.94□□□□□ -0.66
VPS28-216ENST00000533806 A0A0U1RQV5 110 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 A0A1W2PQL4 384 aaPredicted RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 GGT3PA6NGU5 568 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 A8MV72 311 aaPredicted RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 FAM157AC9JC47 383 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 TMEM178BH3BS89 294 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 IFNL4K9M1U5 179 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 PHYHO14832 338 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 MAGEB4O15481 346 aaPredicted RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 CRLF1O75462 422 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 FSTL3O95633 263 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 PNPP00491 289 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 IGHV2-70P01814 119 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 OR2T7P0C7T2 308 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 ZNF16P17020 682 aaPredicted RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 CFL1P23528 166 aaKnown RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 ACKR3P25106 362 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 SRP9P49458 86 aaKnown RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 EGR3Q06889 387 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 SLC3A1Q07837 685 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 MEDAGQ5VYS4 303 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 ENTHD1Q8IYW4 607 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 PLPP7Q8NBV4 271 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 OR8B12Q8NGG6 310 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 OR2T27Q8NH04 317 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 Q8TCH9 128 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 RAB1CQ92928 201 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 RNF166Q96A37 237 aaPredicted RBP10.93□□□□□ -0.66
VPS28-216ENST00000533806 PGAM5Q96HS1 289 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 RDH12Q96NR8 316 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 APOL4Q9BPW4 351 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 BRD7Q9NPI1 651 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 IMPAD1Q9NX62 359 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 ZNF391Q9UJN7 358 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 NPTNQ9Y639 398 aa10.93□□□□□ -0.66
VPS28-216ENST00000533806 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.92□□□□□ -0.665e-7■■■□□ 19.1
VPS28-216ENST00000533806 LOC100130705A0A1B0GUX0 176 aa10.92□□□□□ -0.66
VPS28-216ENST00000533806 TMEM269A0A1B0GVZ9 245 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms