RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 MAGEB1P43366 347 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 CCL8P80075 99 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 TNK1Q13470 666 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 TSTQ16762 297 aaKnown RBP12.14□□□□□ -0.47
NUP54-216ENST00000514901 OR5AS1Q8N127 324 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 YIPF7Q8N8F6 280 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 OR2Z1Q8NG97 314 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 OR2AE1Q8NHA4 323 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 C10orf105Q8TEF2 133 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 GTF3AQ92664 365 aaKnown RBP12.14□□□□□ -0.47
NUP54-216ENST00000514901 ELMOD3Q96FG2 381 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 PIMREGQ9BSJ6 248 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 TMUB1Q9BVT8 246 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 SAP30LQ9HAJ7 183 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 FAM206AQ9NX38 181 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 MRPL15Q9P015 296 aaKnown RBP12.14□□□□□ -0.47
NUP54-216ENST00000514901 MRM2Q9UI43 246 aaKnown RBP12.14□□□□□ -0.47
NUP54-216ENST00000514901 SNX5Q9Y5X3 404 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 R4GMQ9 66 aa12.14□□□□□ -0.47
NUP54-216ENST00000514901 A0A0U1RQV5 110 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 A0A1B0GWJ7 208 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 C5orf63A6NC05 138 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 RRP9O43818 475 aaKnown RBP12.13□□□□□ -0.47
NUP54-216ENST00000514901 TNFRSF1AP19438 455 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 ACHEP22303 614 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 GIFP27352 417 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 CRYBB2P43320 205 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 HSPA13P48723 471 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 TMEM33P57088 247 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 TNFAIP6P98066 277 aaPredicted RBP12.13□□□□□ -0.47
NUP54-216ENST00000514901 FAM3AP98173 230 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 ZNF85Q03923 595 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 CARTPTQ16568 116 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 ZNF684Q5T5D7 378 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 Q6ZR03 302 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 SSX6Q7RTT6 188 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 FAM220AQ7Z4H9 259 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 THAP5Q7Z6K1 395 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 KLBQ86Z14 1044 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 FTMTQ8N4E7 242 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 RFLNBQ8N5W9 214 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 CSNK2A3Q8NEV1 391 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 OR8B12Q8NGG6 310 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 TTTY10Q9BZA0 68 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 PBOV1Q9GZY1 135 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 CHODLQ9H9P2 273 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 AMBNQ9NP70 447 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 ZNF319Q9P2F9 582 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 IL19Q9UHD0 177 aa12.13□□□□□ -0.47
NUP54-216ENST00000514901 NUFIP1Q9UHK0 495 aaKnown RBP12.13□□□□□ -0.47
NUP54-216ENST00000514901 IGHV4-30-2A0A087WSY4 118 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 TRIM64A6NGJ6 449 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 TRIM64BA6NI03 449 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 ANKRD30BLA7E2S9 258 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 LOC110117498-PIK3R3F6TDL0 507 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 GMDSO60547 372 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 NCR1O76036 304 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 ATP6V1B1P15313 513 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 DCKP27707 260 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 SRP9P49458 86 aaKnown RBP12.12□□□□□ -0.47
NUP54-216ENST00000514901 GSK3AP49840 483 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 AQP4P55087 323 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 ACTA2P62736 377 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 ACTG2P63267 376 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 CSNK2BP67870 215 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 MZT1Q08AG7 82 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 GALEQ14376 348 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 CDONQ4KMG0 1287 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 LIPNQ5VXI9 398 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 SPERTQ8NA61 448 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 BHLHE23Q8NDY6 225 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 CNIH3Q8TBE1 160 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 FBLIM1Q8WUP2 373 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 SIGLEC11Q96RL6 698 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 REG4Q9BYZ8 158 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 FGF20Q9NP95 211 aaPredicted RBP12.12□□□□□ -0.47
NUP54-216ENST00000514901 OR52A1Q9UKL2 312 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 RRP15Q9Y3B9 282 aaKnown RBP12.12□□□□□ -0.47
NUP54-216ENST00000514901 CSPG4Q6UVK1 2322 aa12.12□□□□□ -0.47
NUP54-216ENST00000514901 ZNF469Q96JG9 3925 aaPredicted RBP12.12□□□□□ -0.47
NUP54-216ENST00000514901 IGHV1-69-2A0A0G2JMI3 117 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 hCG_38984A0A1B0GV85 526 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 H7C1Q1 480 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 MAGEB4O15481 346 aaPredicted RBP12.11□□□□□ -0.47
NUP54-216ENST00000514901 FAM20BO75063 409 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 SRSF10O75494 262 aaKnown RBP12.11□□□□□ -0.47
NUP54-216ENST00000514901 PNPP00491 289 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 IGHA1P01876 353 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 GNAO1P09471 354 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 ANOS1P23352 680 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 COL8A2P25067 703 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 SLC3A1Q07837 685 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 RIN1Q13671 783 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 OR8B8Q15620 311 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 SMN1Q16637 294 aaKnown RBP12.11□□□□□ -0.47
NUP54-216ENST00000514901 HFEQ30201 348 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 GFOD2Q3B7J2 385 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 BCL2L15Q5TBC7 163 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 ELMOD2Q8IZ81 293 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 CELF2-AS1Q8N7Q2 184 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms