RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 DUX4Q9UBX2 424 aa11.6□□□□□ -0.55
PRPF40A-211ENST00000493468 IGHV3OR15-7A0A075B7D8 119 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 hCG_1807616A0A1W2PRN6 198 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 MEGF11A6BM72 1044 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 A6NLC8 198 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 CDC42EP2O14613 210 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 PPP1R3DO95685 299 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 LCATP04180 440 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 CD28P10747 220 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 CD33P20138 364 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 COL10A1Q03692 680 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 TRAP1Q12931 704 aaKnown RBP11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 NFYCQ13952 458 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 PCK2Q16822 640 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 WDR38Q5JTN6 314 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 CORO6Q6QEF8 472 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 CCBE1Q6UXH8 406 aaPredicted RBP11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 TMPRSS11FQ6ZWK6 438 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 OR51G2Q8NGK0 314 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 CCL13Q99616 98 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 B9D2Q9BPU9 175 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 RERGLQ9H628 205 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 NRIP3Q9NQ35 241 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 SERTAD4Q9NUC0 356 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 C14orf119Q9NWQ9 140 aa11.59□□□□□ -0.55
PRPF40A-211ENST00000493468 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 F5H5K5 113 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 NDUFB3O43676 98 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 GRPP07492 148 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 IGLL1P15814 213 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 FAHP16930 419 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 CRABP1P29762 137 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 TGM4P49221 684 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 DLX1P56177 255 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 PRB3Q04118 309 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 POU4F2Q12837 409 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 TRAM2Q15035 370 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 LY6EQ16553 131 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 MEP1BQ16820 701 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 LRRC10Q5BKY1 277 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 ATPAF1Q5TC12 328 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 SLC18B1Q6NT16 456 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 PGBD2Q6P3X8 592 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 ERICH5Q6P6B1 374 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 DNM1P34Q6PK57 102 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 CFAP77Q6ZQR2 320 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 MBOAT2Q6ZWT7 520 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 FAM216BQ8N7L0 139 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 AJUBAQ96IF1 538 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 CITED2Q99967 270 aaPredicted RBP11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 DNTTIP1Q9H147 329 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 ZNF702PQ9H963 129 aa11.58□□□□□ -0.56
PRPF40A-211ENST00000493468 EPPK1P58107 5090 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 IGLV1-36A0A0B4J1U3 117 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 IMPA2O14732 288 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 CHST1O43916 411 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 NDUFB2O95178 105 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 TXNDC12O95881 172 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 GRK5P34947 590 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 GGT2P36268 569 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 MDH1P40925 334 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 GPR4P46093 362 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 TPTEP56180 551 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 CD69Q07108 199 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 CYBRD1Q53TN4 286 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 PTCHD4Q6ZW05 846 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 TSEN54Q7Z6J9 526 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 NAA40Q86UY6 237 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 SLC26A10Q8NG04 563 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 LRRC29Q8WV35 223 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 C17orf50Q8WW18 174 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 STON2Q8WXE9 905 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 PITX2Q99697 317 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 FNDC11Q9BVV2 318 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 PNRC2Q9NPJ4 139 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 DNAJB11Q9UBS4 358 aa11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 SF3B6Q9Y3B4 125 aaKnown RBP11.57□□□□□ -0.56
PRPF40A-211ENST00000493468 DYNC2H1Q8NCM8 4307 aaKnown RBP11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 A0A087WUU8 490 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 WI2-2373I1.2A0A1W2PRP0 233 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 GGT3PA6NGU5 568 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 M0R135 149 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 BHLHE40O14503 412 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 ACOT8O14734 319 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 DUS4LO95620 317 aaKnown RBP11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 ELF3P78545 371 aaPredicted RBP11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 ZNF92Q03936 586 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 DEFB121Q5J5C9 76 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 ZBTB37Q5TC79 503 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 STUMQ69YW2 141 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 HCP5Q6MZN7 132 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 NANOGP8Q6NSW7 305 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 ZNF730Q6ZMV8 503 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 C11orf53Q8IXP5 236 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 OR8J3Q8NGG0 315 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 RORBQ92753 470 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 ZNF799Q96GE5 643 aa11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 RCC1LQ96I51 464 aaKnown RBP11.56□□□□□ -0.56
PRPF40A-211ENST00000493468 SH3GL1Q99961 368 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms