RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TMEM14DPA8MWL7 114 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 CASRP41180 1078 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 SLC6A9P48067 706 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 SNRPD2P62316 118 aaKnown RBP18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF626Q68DY1 528 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 AAED1Q7RTV5 226 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 CDH26Q8IXH8 852 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF436Q9C0F3 470 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 CRLF2Q9HC73 371 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 IL17BQ9UHF5 180 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 KLK13Q9UKR3 277 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 A0A0U1RQV5 110 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 VSIG10L2P0DP72 767 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 SLC36A1Q7Z2H8 476 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 GPR137CQ8N3F9 429 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 CMBLQ96DG6 245 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF845Q96IR2 970 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 HES7Q9BYE0 225 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF703Q9H7S9 590 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 GPN1Q9HCN4 374 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 PLEK2Q9NYT0 353 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 PTTG3PQ9NZH4 202 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 FREM2Q5SZK8 3169 aa18.53■□□□□ 0.56
CCDC88B-208ENST00000492980 AHCTF1Q8WYP5 2266 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 IGKV1-9A0A0C4DH69 117 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 SNRPGP15A8MWD9 76 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 M0R135 149 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF780AO75290 641 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 DBHP09172 617 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 CPN1P15169 458 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 ITGA3P26006 1051 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 DTX1Q86Y01 620 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 OR11H4Q8NGC9 324 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 SSC4DQ8WTU2 575 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 CPNE4Q96A23 557 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF799Q96GE5 643 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 C1orf147Q96MC9 270 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 TMEM38BQ9NVV0 291 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 ABI3Q9P2A4 366 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF69Q9UC07 566 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 ZNF107Q9UII5 783 aaPredicted RBP18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 MGAT4AQ9UM21 535 aa18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 MRPS28Q9Y2Q9 187 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-208ENST00000492980 A6NL46 340 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 CREBL2O60519 120 aaPredicted RBP18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 CYTIPO60759 359 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 HCKP08631 526 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 RFC3P40938 356 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 OR3A4PP47883 348 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 GLIPR1L1Q6UWM5 242 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 GALNT16Q8N428 558 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 CPT1CQ8TCG5 803 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF431Q8TF32 576 aaPredicted RBP18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 ALKBH3Q96Q83 286 aaPredicted RBP18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 FAM117AQ9C073 453 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 SCP2D1Q9UJQ7 156 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 V9GYS6 101 aa18.52■□□□□ 0.55
CCDC88B-208ENST00000492980 RAB3DO95716 219 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 CST2P09228 141 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 SPEM2Q0P670 501 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 OR1C1Q15619 314 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 NLRC3Q7RTR2 1065 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 OR2W3Q7Z3T1 314 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF101Q8IZC7 436 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 SPTSSAQ969W0 71 aa18.51■□□□□ 0.55
CCDC88B-208ENST00000492980 STMND1H3BQB6 276 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 LINC01387J3KSC0 135 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 SCGNO76038 276 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 CYB5AP00167 134 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 APOC1P02654 83 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 CD74P04233 296 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 HPNP05981 417 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 AIMP2Q13155 320 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 RAB35Q15286 201 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 CDNFQ49AH0 187 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 Q6ZSR3 168 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 FJX1Q86VR8 437 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 SPICQ8N5J4 248 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 MEIOBQ8N635 442 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 CHST4Q8NCG5 386 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 NUDT16L1Q9BRJ7 211 aaKnown RBP18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 TINAGL1Q9GZM7 467 aaPredicted RBP18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 PLA2G3Q9NZ20 509 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 M0QYG6 137 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 DHRS3O75911 302 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 RLN1P04808 185 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 MELTFP08582 738 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 CELA3AP09093 270 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 CRYGSP22914 178 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 THBS4P35443 961 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 SULF2Q8IWU5 870 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 OR52B4Q8NGK2 314 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 ABHD3Q8WU67 409 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 MGAT4CQ9UBM8 478 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 B4GALT7Q9UBV7 327 aa18.5■□□□□ 0.55
CCDC88B-208ENST00000492980 ZNF736B4DX44 427 aaPredicted RBP18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 SGCEO43556 437 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 SYNGR3O43761 229 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 PRF1P14222 555 aa18.49■□□□□ 0.55
CCDC88B-208ENST00000492980 GSK3AP49840 483 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms