RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 IL15RAQ13261 267 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ILKQ13418 452 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ART3Q13508 389 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 DMC1Q14565 340 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 PGGHGQ32M88 737 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 HSDL1Q3SXM5 330 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 YIF1BQ5BJH7 314 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TEX30Q5JUR7 227 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 GUSBP11Q6P575 273 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TMEM220Q6QAJ8 160 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 SPINT4Q6UDR6 99 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ZNF101Q8IZC7 436 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TAF1LQ8IZX4 1826 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 SPANXA2-OT1Q8N9U9 137 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TTC29Q8NA56 475 aaPredicted RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 NAV1Q8NEY1 1877 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 OR4M1Q8NGD0 313 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 OR56A4Q8NGH8 313 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 OR1J4Q8NGS1 313 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 OR1P1Q8NH06 330 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TVP23CQ96ET8 276 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 TGS1Q96RS0 853 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 PLIN2Q99541 437 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 UQCC2Q9BRT2 126 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 WNK3Q9BYP7 1800 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 UCK2Q9BZX2 261 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 ZYG11BQ9C0D3 744 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 SLC7A5P2Q9GIP4 190 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 NMRK1Q9NWW6 199 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 RHBDL2Q9NX52 303 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 DCAF16Q9NXF7 216 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 SLC39A1Q9NY26 324 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 GCNT4Q9P109 453 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 RABL2AQ9UBK7 228 aaPredicted RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 DHCR7Q9UBM7 475 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 ZNF391Q9UJN7 358 aa1.02□□□□□ -2.25
SMC4-220ENST00000488017 FARSAQ9Y285 508 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 RRP15Q9Y3B9 282 aaKnown RBP1.02□□□□□ -2.25
SMC4-220ENST00000488017 NCAPD3P42695 1498 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 BAZ1BQ9UIG0 1483 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 INSRP06213 1382 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 PIK3R4Q99570 1358 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 IGHV3OR16-8A0A075B7F1 116 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 IGHV3-49A0A0A0MS15 119 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CCDC169A6NNP5 214 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 PDZK1P1A8MUH7 402 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 F8VZ95 297 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 TNFRSF11BO00300 401 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 DNALI1O14645 258 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 CDH16O75309 829 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CNMDO75829 334 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CYB5R3P00387 301 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 HBE1P02100 147 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 TPM2P07951 284 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 LGALS3P17931 250 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 TCP1P17987 556 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 GABRG2P18507 467 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CASQ1P31415 396 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 OTX1P32242 354 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 RFC3P40938 356 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 NBL1P41271 181 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 SLC1A2P43004 574 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 SYKP43405 635 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 MRPL19P49406 292 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 CMC4P56277 68 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 BEX3Q00994 111 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 MERTKQ12866 999 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 PNOCQ13519 176 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 RCN1Q15293 331 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 TRMT5Q32P41 509 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 FAM222AQ5U5X8 452 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 SPESP1Q6UW49 350 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CENPQQ7L2Z9 268 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 SCD5Q86SK9 330 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 LUZP2Q86TE4 346 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 SLC7A5P1Q8MH63 180 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 GABRG1Q8N1C3 465 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 SLC35G3Q8N808 338 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 APCDD1LQ8NCL9 501 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CCDC148Q8NFR7 591 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 OR4C5Q8NGB2 326 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 OR5AR1Q8NGP9 310 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 OR52E5Q8NH55 327 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 OR10G6Q8NH81 332 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 CPNE4Q96A23 557 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 C8orf44Q96CB5 159 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 HAUS1Q96CS2 278 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 IP6K3Q96PC2 410 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 XPO6Q96QU8 1125 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 CHP1Q99653 195 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 BPIFA3Q9BQP9 254 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 RHOXF2Q9BQY4 288 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 MARVELD1Q9BSK0 173 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 ANGPTL4Q9BY76 406 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 FRMD8P1Q9BZ68 369 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 LHX5Q9H2C1 402 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 ZSCAN16Q9H4T2 348 aaPredicted RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 ZNF442Q9H7R0 627 aa1.01□□□□□ -2.25
SMC4-220ENST00000488017 GEMIN7Q9H840 131 aaKnown RBP1.01□□□□□ -2.25
SMC4-220ENST00000488017 RGS18Q9NS28 235 aa1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms