RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TRUB1Q8WWH5 349 aaKnown RBP12.5□□□□□ -0.41
USP4-212ENST00000486549 DVL3Q92997 716 aaPredicted RBP12.5□□□□□ -0.41
USP4-212ENST00000486549 RFKQ969G6 155 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 SGK3Q96BR1 496 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 OR8B4Q96RC9 309 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 OPA3Q9H6K4 179 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 NIPAL2Q9H841 368 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 YAE1D1Q9NRH1 226 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 SMPD3Q9NY59 655 aaPredicted RBP12.5□□□□□ -0.41
USP4-212ENST00000486549 HAO2Q9NYQ3 351 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 ZNF319Q9P2F9 582 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 IL19Q9UHD0 177 aa12.5□□□□□ -0.41
USP4-212ENST00000486549 INAFM1C9JVW0 142 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 E9PQ18 207 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 PHYHO14832 338 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 WNT9BO14905 357 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 MAGEB4O15481 346 aaPredicted RBP12.49□□□□□ -0.41
USP4-212ENST00000486549 TACSTD2P09758 323 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 IGHV4-31P0DP07 118 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 CA6P23280 308 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 IL2RGP31785 369 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 RIDAP52758 137 aaKnown RBP12.49□□□□□ -0.41
USP4-212ENST00000486549 POU4F2Q12837 409 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 OR8G1Q15617 311 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 ZNF771Q7L3S4 317 aaPredicted RBP12.49□□□□□ -0.41
USP4-212ENST00000486549 ZNF679Q8IYX0 411 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 OR10H4Q8NGA5 316 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 OR8B12Q8NGG6 310 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 SPSB4Q96A44 273 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 MEGF10Q96KG7 1140 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 MNTQ99583 582 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 APOL4Q9BPW4 351 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 ADAT1Q9BUB4 502 aaKnown RBP12.49□□□□□ -0.41
USP4-212ENST00000486549 FAM118AQ9NWS6 357 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 DCAF16Q9NXF7 216 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 GTF2A1LQ9UNN4 478 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 WIPI2Q9Y4P8 454 aa12.49□□□□□ -0.41
USP4-212ENST00000486549 LOC100130705A0A1B0GUX0 176 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 hCG_38984A0A1B0GV85 526 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 TMEM269A0A1B0GVZ9 245 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 ISPDA4D126 451 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 CRLF1O75462 422 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 SRP9P49458 86 aaKnown RBP12.48□□□□□ -0.41
USP4-212ENST00000486549 GZMKP49863 264 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 SNRPGP62308 76 aaKnown RBP12.48□□□□□ -0.41
USP4-212ENST00000486549 ELF3P78545 371 aaPredicted RBP12.48□□□□□ -0.41
USP4-212ENST00000486549 FAM3AP98173 230 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 ROM1Q03395 351 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 SLC3A1Q07837 685 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 TMED1Q13445 227 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 ZNF829Q3KNS6 432 aaPredicted RBP12.48□□□□□ -0.41
USP4-212ENST00000486549 CYB5R2Q6BCY4 276 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 DEGS2Q6QHC5 323 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 PLEKHG7Q6ZR37 379 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 SSX6Q7RTT6 188 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 ENTHD1Q8IYW4 607 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 ZNF555Q8NEP9 628 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 CLDND2Q8NHS1 167 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 RNFT2Q96EX2 444 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 TIMD4Q96H15 378 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 SOX7Q9BT81 388 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 FAM206AQ9NX38 181 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP4-212ENST00000486549 PPP1R3CQ9UQK1 317 aa12.48□□□□□ -0.41
USP4-212ENST00000486549 A0A1W2PQL4 384 aaPredicted RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 ANKRD30BLA7E2S9 258 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 ZNF254O75437 659 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 IFNA2P01563 188 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 CFL1P23528 166 aaKnown RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 MTNR1AP48039 350 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 GSK3AP49840 483 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 MFGE8Q08431 387 aaPredicted RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 OCLNQ16625 522 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 C6orf52Q5T4I8 152 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 PRAMEF6Q5VXH4 476 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 MEDAGQ5VYS4 303 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 PEG10Q86TG7 708 aaKnown RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 MOGAT3Q86VF5 341 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 COMMD2Q86X83 199 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 YIPF7Q8N8F6 280 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 ZNF420Q8TAQ5 688 aaPredicted RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 CYGBQ8WWM9 190 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 RAB1CQ92928 201 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 RDH12Q96NR8 316 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 GCM1Q9NP62 436 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 TMEM106BQ9NUM4 274 aa12.47□□□□□ -0.41
USP4-212ENST00000486549 MRPL15Q9P015 296 aaKnown RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 SONP18583 2426 aaKnown RBP12.47□□□□□ -0.41
USP4-212ENST00000486549 MALRD1Q5VYJ5 2156 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 FN1P02751 2386 aaKnown RBP12.46□□□□□ -0.41
USP4-212ENST00000486549 LOC100289279A0A1B0GTE1 492 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 A8MV72 311 aaPredicted RBP12.46□□□□□ -0.41
USP4-212ENST00000486549 LOC110117498-PIK3R3F6TDL0 507 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 DLGAP1O14490 977 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 RPP14O95059 124 aaKnown RBP12.46□□□□□ -0.41
USP4-212ENST00000486549 KRT8P05787 483 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 OR2T7P0C7T2 308 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 GABRB1P18505 474 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 MMP16P51512 607 aa12.46□□□□□ -0.41
USP4-212ENST00000486549 EGR3Q06889 387 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms