RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 PARVAQ9NVD7 372 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 CTSZQ9UBR2 303 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PHF11Q9UIL8 331 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 PAM16Q9Y3D7 125 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 FBXO7Q9Y3I1 522 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 TEX264Q9Y6I9 313 aa3.63□□□□□ -1.83
HMGB1-207ENST00000468384 TMEM272A0A1B0GTI8 110 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 CTAGE9A4FU28 777 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 C5orf51A6NDU8 294 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 DUXAA6NLW8 204 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 FAM25EA8MYX2 175 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 CASQ2O14958 399 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-207ENST00000468384 HDAC3O15379 428 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 PROP1O75360 226 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 ECDO95905 644 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-207ENST00000468384 OR8U8P0C7N1 319 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 ETS1P14921 441 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 PIK3R1P27986 724 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 SYKP43405 635 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 DLK1P80370 383 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 RBBP4Q09028 425 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 PLA2G7Q13093 441 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 SELENBP1Q13228 472 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 MAB21L1Q13394 359 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 PMS2P3Q13401 168 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 TRADDQ15628 312 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 GSG1Q2KHT4 349 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 KRTAP6-3Q3LI67 103 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 AARDQ4LEZ3 155 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 FAM201AQ5SY85 155 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 GCNT6Q5T4J0 391 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 NCR3LG1Q68D85 454 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 FAM173BQ6P4H8 233 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 TMIGD1Q6UXZ0 262 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 Q75L30 129 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 AAED1Q7RTV5 226 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 THOC6Q86W42 341 aaKnown RBP3.62□□□□□ -1.83
HMGB1-207ENST00000468384 LRRC6Q86X45 466 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 CNGA4Q8IV77 575 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF567Q8N184 647 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 COMMD1Q8N668 190 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 DRAM1Q8N682 238 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 C1orf52Q8N6N3 182 aaKnown RBP3.62□□□□□ -1.83
HMGB1-207ENST00000468384 ICA1LQ8NDH6 482 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 PSMA8Q8TAA3 256 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 RNASE8Q8TDE3 154 aaKnown RBP3.62□□□□□ -1.83
HMGB1-207ENST00000468384 OIT3Q8WWZ8 545 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 TMEM45BQ96B21 275 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 ZHX1-C8orf76Q96EF9 292 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 C5orf30Q96GV9 206 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 TXNDC15Q96J42 360 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 MAGEB18Q96M61 343 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 NDEL1Q9GZM8 345 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 KRCC1Q9NPI7 259 aaPredicted RBP3.62□□□□□ -1.83
HMGB1-207ENST00000468384 ABCB10Q9NRK6 738 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 MAT2BQ9NZL9 334 aa3.62□□□□□ -1.83
HMGB1-207ENST00000468384 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.62□□□□□ -1.835e-9■■■■□ 21.7
HMGB1-207ENST00000468384 A0A1W2PPK0 400 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 ANKDD1BA6NHY2 528 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 CTDSPLO15194 276 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 ANXA9O76027 345 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 UTS2O95399 124 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 DIRAS3O95661 229 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 IFNA5P01569 189 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 IGLV1-51P01701 117 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 SNRPAP09012 282 aaKnown RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 MPC1LP0DKB6 136 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 SPP1P10451 314 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 CD79AP11912 226 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 NCF1P14598 390 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 RPS3P23396 243 aaKnown RBP eCLIP3.61□□□□□ -1.839e-18■■□□□ 12.1
HMGB1-207ENST00000468384 SSR2P43308 183 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 ATP5OP48047 213 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 XKP51811 444 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 UCP2P55851 309 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 KRTAP10-4P60372 401 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 SEC61BP60468 96 aaKnown RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 SLC25A11Q02978 314 aaKnown RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 POU6F1Q14863 301 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 PDK2Q15119 407 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 TRMT12Q53H54 448 aaKnown RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 GRTP1Q5TC63 336 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 KLHL10Q6JEL2 608 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 HCP5Q6MZN7 132 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 NRARPQ7Z6K4 114 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 RTN4RL2Q86UN3 420 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 UBE2DNLQ8IWF7 75 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 GATSQ8NAP1 163 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 LY6G5BQ8NDX9 201 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 OR13J1Q8NGT2 312 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 OR52I2Q8NH67 350 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 ZNF420Q8TAQ5 688 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 LRRC8CQ8TDW0 803 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 C4orf3Q8WVX3 66 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 URB1-AS1Q96HZ7 61 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 VSTM2LQ96N03 204 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 USP28Q96RU2 1077 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 MTERF1Q99551 399 aaKnown RBP3.61□□□□□ -1.83
HMGB1-207ENST00000468384 ERP44Q9BS26 406 aa3.61□□□□□ -1.83
HMGB1-207ENST00000468384 LMF2Q9BU23 707 aaKnown RBP3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms