RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 IFITM10A6NMD0 228 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC19A2O60779 497 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PRAMEF10O60809 474 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ANXA9O76027 345 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM50AO95807 157 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CD74P04233 296 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SERPINA7P05543 415 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CD2P06729 351 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 HTR2CP28335 458 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC6A8P48029 635 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CLDN12P56749 244 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 WDR5P61964 334 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 DEFB103AP81534 67 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 GAGE5Q13069 117 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 GAGE6Q13070 117 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TCTN1Q2MV58 587 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM128Q5BJH2 165 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TCEAL5Q5H9L2 206 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ELFN2Q5R3F8 820 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 NSUN5P2Q63ZY6 315 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TXNRD3NBQ6F5E7 133 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TEX38Q6PEX7 206 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 DHRS11Q6UWP2 260 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF621Q6ZSS3 439 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CHMP1BQ7LBR1 199 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ADGRF3Q8IZF5 1079 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 JAGN1Q8N5M9 183 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 OR52E5Q8NH55 327 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 OR2AE1Q8NHA4 323 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 THAP6Q8TBB0 222 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF431Q8TF32 576 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 WIPF2Q8TF74 440 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ROPN1LQ96C74 230 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 MRAP2Q96G30 205 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 AURKBQ96GD4 344 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PRR25Q96S07 402 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 P2RX4Q99571 388 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 DPAGT1Q9H3H5 408 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PIGMQ9H3S5 423 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ABHD10Q9NUJ1 306 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 C5orf42Q9H799 3197 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TRAV8-7A0A075B6U6 113 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 A0A0U1RQF3 1178 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 EI24O14681 340 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PHOX2AO14813 284 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 RGS16O15492 202 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TRIAP1O43715 76 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 NKX2-2O95096 273 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 MPC2O95563 127 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 AMBPP02760 352 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 FABP3P05413 133 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SFTPBP07988 381 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 OR13C7P0DN81 318 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TDGF1P13385 188 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CREB1P16220 341 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SPINK2P20155 84 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 F2RP25116 425 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CAV2P51636 162 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 HBA1P69905 142 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CXADRP78310 365 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 MRPS6P82932 125 aaKnown RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PAX2Q02962 417 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 GNMTQ14749 295 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 OR1Q1Q15612 314 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 VWC2Q2TAL6 325 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TMEM268Q5VZI3 342 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SFRP4Q6FHJ7 346 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 FAAP20Q6NZ36 180 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 GJB7Q6PEY0 223 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 DOLPP1Q86YN1 238 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ENGASEQ8NFI3 743 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 OR10D4PQ8NGN7 298 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 OR10A6Q8NH74 314 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SPPL2BQ8TCT7 592 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 LRRC15Q8TF66 581 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 C10orf82Q8WW14 230 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 MBD6Q96DN6 1003 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 SLC35G5Q96KT7 338 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 CPXM1Q96SM3 734 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 FUNDC2Q9BWH2 189 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 HCAR1Q9BXC0 346 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 AMBRA1Q9C0C7 1298 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PPDPFQ9H3Y8 114 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 EGLN3Q9H6Z9 239 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 PAK1IP1Q9NWT1 392 aaPredicted RBP4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 ELOVL5Q9NYP7 299 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 TNFSF18Q9UNG2 199 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 LRP12Q9Y561 859 aa4.23□□□□□ -1.73
CCDC88A-209ENST00000456975 MYH9P35579 1960 aaKnown RBP4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 PLXNA4Q9HCM2 1894 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TRAV30A0A087WSZ9 112 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 A0A087WWV3 80 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 TRAPPC13A5PLN9 417 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 NKX2-6A6NCS4 301 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 YJEFN3A6XGL0 299 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ZNF878C9JN71 531 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 G3V4G9 280 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 K7EN84 100 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 ORC5O43913 435 aa4.22□□□□□ -1.73
CCDC88A-209ENST00000456975 FCGR3BO75015 233 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms