RNA–Protein interactions for RNA: ENST00000439008.1

LINC00399-201, long intergenic non-protein coding RNA 399, humanhuman

TSL 2 BASIC

Gene LINC00399, Length 414 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00399-201ENST00000439008 TMEM100Q9NV29 134 aa11.18□□□□□ -0.62
LINC00399-201ENST00000439008 hCG_38984A0A1B0GV85 526 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 CLDN25C9JDP6 229 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 TMEM178BH3BS89 294 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 LMX1BO60663 402 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 SRSF10O75494 262 aaKnown RBP11.17□□□□□ -0.62
LINC00399-201ENST00000439008 ZNF205O95201 554 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 CYB5R3P00387 301 aaPredicted RBP11.17□□□□□ -0.62
LINC00399-201ENST00000439008 PNPP00491 289 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 IGHV2-5P01817 119 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 SBK2P0C263 348 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 ACKR3P25106 362 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 HSD11B1P28845 292 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 RAD23AP54725 363 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 ROM1Q03395 351 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 MFGE8Q08431 387 aaPredicted RBP11.17□□□□□ -0.62
LINC00399-201ENST00000439008 ZMYND11Q15326 602 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 PRAMEF6Q5VXH4 476 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 MOGAT3Q86VF5 341 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 SLC35F2Q8IXU6 374 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 OR8B12Q8NGG6 310 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 REEP6Q96HR9 211 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 OR8B4Q96RC9 309 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 FGF23Q9GZV9 251 aaPredicted RBP11.17□□□□□ -0.62
LINC00399-201ENST00000439008 LPAR2Q9HBW0 351 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 FAM206AQ9NX38 181 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 HAO2Q9NYQ3 351 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 LAMP5Q9UJQ1 280 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 PPP1R3CQ9UQK1 317 aa11.17□□□□□ -0.62
LINC00399-201ENST00000439008 GGT3PA6NGU5 568 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 SLC22A31A6NKX4 558 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 KIAA1324LA8MWY0 1029 aaPredicted RBP11.16□□□□□ -0.62
LINC00399-201ENST00000439008 XRCC2O43543 280 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 GABRB1P18505 474 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 TNFSF4P23510 183 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 CD200P41217 278 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 GSK3AP49840 483 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 PSMA6P60900 246 aaKnown RBP11.16□□□□□ -0.62
LINC00399-201ENST00000439008 CXCR4P61073 352 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 GFOD2Q3B7J2 385 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 LCN1P1Q5VSP4 162 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 FAM166AQ6J272 317 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 PLEKHG7Q6ZR37 379 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 KRT77Q7Z794 578 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 WDR86Q86TI4 376 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 LINC01356Q8N9X3 169 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 OR51G2Q8NGK0 314 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 OR8J1Q8NGP2 316 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 FAM81AQ8TBF8 368 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 SPRYD4Q8WW59 207 aaPredicted RBP11.16□□□□□ -0.62
LINC00399-201ENST00000439008 RNF166Q96A37 237 aaPredicted RBP11.16□□□□□ -0.62
LINC00399-201ENST00000439008 CNN2Q99439 309 aaKnown RBP11.16□□□□□ -0.62
LINC00399-201ENST00000439008 TBX5Q99593 518 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 ZNF665Q9H7R5 613 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 ENOPH1Q9UHY7 261 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 MRM2Q9UI43 246 aaKnown RBP11.16□□□□□ -0.62
LINC00399-201ENST00000439008 NPTNQ9Y639 398 aa11.16□□□□□ -0.62
LINC00399-201ENST00000439008 DOCK11Q5JSL3 2073 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 C3orf80F5H4A9 247 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 ENTPD6O75354 484 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 PTBP3O95758 552 aaKnown RBP11.15□□□□□ -0.62
LINC00399-201ENST00000439008 BAG2O95816 211 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 TNFRSF1AP19438 455 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 HTR1FP30939 366 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 GATA4P43694 442 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 SEC61A1P61619 476 aaKnown RBP11.15□□□□□ -0.62
LINC00399-201ENST00000439008 OR8G1Q15617 311 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 OR8B8Q15620 311 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 TIGD6Q17RP2 521 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 ZNF684Q5T5D7 378 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 ZBTB49Q6ZSB9 765 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 LRRC28Q86X40 367 aaPredicted RBP11.15□□□□□ -0.62
LINC00399-201ENST00000439008 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.15□□□□□ -0.62
LINC00399-201ENST00000439008 GID4Q8IVV7 300 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 ZNF679Q8IYX0 411 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 C19orf18Q8NEA5 215 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 RAB1CQ92928 201 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 PGAM5Q96HS1 289 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 ADAT1Q9BUB4 502 aaKnown RBP11.15□□□□□ -0.62
LINC00399-201ENST00000439008 PRRG3Q9BZD7 231 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 UFSP2Q9NUQ7 469 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 CLN6Q9NWW5 311 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 H2AFY2Q9P0M6 372 aaPredicted RBP11.15□□□□□ -0.62
LINC00399-201ENST00000439008 RHBDD3Q9Y3P4 386 aa11.15□□□□□ -0.62
LINC00399-201ENST00000439008 COL6A5A8TX70 2615 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 A0A1W2PQL4 384 aaPredicted RBP11.14□□□□□ -0.63
LINC00399-201ENST00000439008 PLPP2O43688 288 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 FAM20BO75063 409 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 IGLV3-1P01715 115 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 ZFP36P26651 326 aaKnown RBP11.14□□□□□ -0.63
LINC00399-201ENST00000439008 SRP9P49458 86 aaKnown RBP11.14□□□□□ -0.63
LINC00399-201ENST00000439008 CR1LQ2VPA4 569 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 DMRTC1Q5HYR2 192 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 FAM120AOSQ5T036 256 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 DEGS2Q6QHC5 323 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 ZNF322Q6U7Q0 402 aaPredicted RBP11.14□□□□□ -0.63
LINC00399-201ENST00000439008 C1orf229Q6ZS94 237 aaPredicted RBP11.14□□□□□ -0.63
LINC00399-201ENST00000439008 ZNF826PQ6ZT77 177 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 C11orf53Q8IXP5 236 aa11.14□□□□□ -0.63
LINC00399-201ENST00000439008 OR52H1Q8NGJ2 320 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms