RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 SPRYD7Q5W111 196 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 OR5M10Q6IEU7 315 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 PP6455Q8WZ26 134 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 AAMDCQ9H7C9 122 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 RARRES3Q9UL19 164 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 CLEC18AA5D8T8 446 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 RHOBP62745 196 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 C17orf67Q0P5P2 114 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 CLEC18CQ8NCF0 446 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 PDXPQ96GD0 296 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 WASHC3Q9Y3C0 194 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 A0A1W2PRU2 124 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 NKX6-3A6NJ46 265 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 SLC17A3O00476 420 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 COCHO43405 550 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 TTRP02766 147 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 SLC25A6P12236 298 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 HTR5AP47898 357 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 DHRS2Q13268 280 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 PLAC9Q5JTB6 97 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 SMPD1P17405 629 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 EN2P19622 333 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-206ENST00000409809 KHDC3LQ587J8 217 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 CPEB3Q8NE35 698 aaKnown RBP11.75□□□□□ -0.53
COL6A3-206ENST00000409809 MTFP1Q9UDX5 166 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 BOKQ9UMX3 212 aaPredicted RBP11.75□□□□□ -0.53
COL6A3-206ENST00000409809 GBF1Q92538 1859 aa11.75□□□□□ -0.53
COL6A3-206ENST00000409809 LOC107986453A0A1B0GWG9 222 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 OR5AL1P0C617 328 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 OR5AR1Q8NGP9 310 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 LYRM4Q9HD34 91 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 CHST2Q9Y4C5 530 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 C5orf52A6NGY3 159 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 HOXA6P31267 233 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 STAC2Q6ZMT1 411 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 SLC35E3Q7Z769 313 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 POM121Q96HA1 1249 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 LEFTY2O00292 366 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 ADRA1AP35348 466 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 SMAGPQ0VAQ4 97 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 C6orf201Q7Z4U5 140 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 GPR61Q9BZJ8 451 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TBX21Q9UL17 535 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TDRD15B5MCY1 1934 aaKnown RBP11.74□□□□□ -0.53
COL6A3-206ENST00000409809 H7C1C5 153 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 SLC17A2O00624 439 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 NXPH2O95156 264 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 CD79AP11912 226 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 B2MP61769 119 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TEAD2Q15562 447 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 RTN4IP1Q8WWV3 396 aaPredicted RBP11.74□□□□□ -0.53
COL6A3-206ENST00000409809 NMNAT3Q96T66 252 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 NCOR1P1Q9H4R4 102 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 OBP2BQ9NPH6 170 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 NWD2Q9ULI1 1742 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 CLEC2LP0C7M8 214 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 SLC25A4P12235 298 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 CSNK1EP49674 416 aaKnown RBP11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TAS2R60P59551 318 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM268Q5VZI3 342 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 XAF1Q6GPH4 301 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 OR5D13Q8NGL4 314 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 SOD2P04179 222 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 SEC13P55735 322 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 LMAN2Q12907 356 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 NXF5Q9H1B4 397 aaKnown RBP11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TNFRSF10CO14798 259 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 GAL3ST2Q9H3Q3 398 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 INSL6Q9Y581 213 aa11.74□□□□□ -0.53
COL6A3-206ENST00000409809 TCRBV5S2A0A599 114 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 EIF4E2O60573 245 aaKnown RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 RHBDL1O75783 438 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 CD3DP04234 171 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 SQSTM1Q13501 440 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 VRK2Q86Y07 508 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 GPR32P1Q8NGA4 272 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 PEX11GQ96HA9 241 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 BARX1Q9HBU1 254 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TREM2Q9NZC2 230 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 HSFX1Q9UBD0 423 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TMX2-CTNND1H3BSU7 103 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 IL24Q13007 206 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 YOD1Q5VVQ6 348 aaPredicted RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 Q8IYB0 196 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 ZNF737O75373 536 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM151BQ8IW70 566 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 TMEM251Q8N6I4 163 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 RBM14Q96PK6 669 aaKnown RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 ADAT1Q9BUB4 502 aaKnown RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 H3BML4 177 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 BTG2P78543 158 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 OSTM1Q86WC4 334 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 NXT1Q9UKK6 140 aaKnown RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 PYCARD-AS1I3L0S3 204 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 J3KTA2 159 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 PSMB2P49721 201 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 RPS15P62841 145 aaKnown RBP11.73□□□□□ -0.53
COL6A3-206ENST00000409809 NNATQ16517 81 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 S1PR3Q99500 378 aa11.73□□□□□ -0.53
COL6A3-206ENST00000409809 MED20Q9H944 212 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms