RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 FBXO7Q9Y3I1 522 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 KLF12Q9Y4X4 402 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 USH1CQ9Y6N9 552 aa3.33□□□□□ -1.88
HMGB1-204ENST00000399489 EIF3AQ14152 1382 aaKnown RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 STRCP1A6NGW2 1772 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 DEPDC5O75140 1603 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 UTRNP46939 3433 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 SYNMO15061 1565 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 SAMD9LQ8IVG5 1584 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 IGHV4OR15-8A0A075B7B6 117 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DS1A0A191URI9 304 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 VPS37CA5D8V6 355 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF98A6NK75 572 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 B4DXG7 233 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 C9J4A7 227 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 G3V2L1 256 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CDIPTO14735 213 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 MAGEB4O15481 346 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CDC40O60508 579 aaKnown RBP eCLIP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 HPGDSO60760 199 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ICOSLGO75144 302 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 FKBP6O75344 327 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CCNKO75909 580 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF432O94892 652 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CTDNEP1O95476 244 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 RAB36O95755 333 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 GLUD1P00367 558 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 HLA-AP01891 365 aaKnown RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CDK1P06493 297 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 LINC00614P0C842 121 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 THRAP10827 490 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PVRP15151 417 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 GABRG2P18507 467 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ATP6V1B2P21281 511 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DS4P43632 304 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CYB561P49447 251 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PDLIM4P50479 330 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 EFNA3P52797 238 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 AQP5P55064 265 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 TAS2R39P59534 338 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 SLC25A11Q02978 314 aaKnown RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 KIR2DS1Q14954 304 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 GUSBP1Q15486 140 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 TOMM34Q15785 309 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PDZD11Q5EBL8 140 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 SPIN3Q5JUX0 258 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 TRIQKQ629K1 86 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 REP15Q6BDI9 236 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PWWP2BQ6NUJ5 590 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF790Q6PG37 636 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ACOT7LQ6ZUV0 252 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CALHM1Q8IU99 346 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CA13Q8N1Q1 262 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 STPG2Q8N412 459 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 SAMD12Q8N8I0 201 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 HSD17B11Q8NBQ5 300 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 OR5AP2Q8NGF4 316 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 OR5AR1Q8NGP9 310 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PIGXQ8TBF5 258 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 RNF138Q8WVD3 245 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 APH1BQ8WW43 257 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 DYNLL2Q96FJ2 89 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 STACQ99469 402 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF2Q9BSG1 426 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PITPNM3Q9BZ71 974 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ALX4Q9H161 411 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 WDR13Q9H1Z4 485 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 C11orf49Q9H6J7 331 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ELL3Q9HB65 397 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ACOT13Q9NPJ3 140 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 FGFR1OP2Q9NVK5 253 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 VNN3Q9NY84 501 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 IL17CQ9P0M4 197 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 TMEM9Q9P0T7 183 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PSG11Q9UQ72 335 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ARL2BPQ9Y2Y0 163 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ACOT9Q9Y305 439 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 GOLT1BQ9Y3E0 138 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 MYO5CQ9NQX4 1742 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 A2MP01023 1474 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 PZPP20742 1482 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 NLRP1Q9C000 1473 aa3.32□□□□□ -1.88
HMGB1-204ENST00000399489 CDK12Q9NYV4 1490 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF532Q9HCE3 1301 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZFYVE9O95405 1425 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 USP6P35125 1406 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 MIA2Q96PC5 1412 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 LRP6O75581 1613 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 IQCMA0A1B0GVH7 501 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 SMKR1H3BMG3 65 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 H7C2Y5 167 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 M0QZ92 97 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 M0QZK8 103 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 NME4O00746 187 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 SLC31A2O15432 143 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ZNF749O43361 778 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 MBTPS2O43462 519 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 RAD51CO43502 376 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 ARG1P05089 322 aa3.31□□□□□ -1.88
HMGB1-204ENST00000399489 LIMS3P0CW19 117 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms