RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 Q6ZSR9 355 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 SLC51BQ86UW2 128 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 GPR32P1Q8NGA4 272 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR51S1Q8NGJ8 323 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR6S1Q8NH40 331 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 MISP3Q96FF7 219 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 SMOC1Q9H4F8 434 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 OR5V1Q9UGF6 321 aa6.51□□□□□ -1.37
UPF2-203ENST00000397053 IGKV3-7A0A075B6H7 116 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 hADV38S2A0JD32 116 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CLEC18AA5D8T8 446 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TUBAL3A6NHL2 446 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 MS4A18H0YCH9 400 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 M0R296 226 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 DNPH1O43598 174 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TCRBP04435 133 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ANKRD34CP0C6C1 535 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 COX6B1P14854 86 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 SUMO3P55854 103 aaPredicted RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 ZNF816Q0VGE8 651 aaPredicted RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 AGERQ15109 404 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 MS4A18Q3C1V0 323 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TMEM182Q6ZP80 229 aaPredicted RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 SIAH3Q8IW03 269 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 KCNRGQ8N5I3 272 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 PARP16Q8N5Y8 322 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CLEC18CQ8NCF0 446 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OR4D10Q8NGI6 311 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 SIGLEC11Q96RL6 698 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 PKMYT1Q99640 499 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TXNIPQ9H3M7 391 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ZFP64Q9NPA5 681 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 PCDHGA9Q9Y5G4 932 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 TRABD2BA6NFA1 517 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 SSSCA1O60232 199 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OPRK1P41145 380 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 RPS27P42677 84 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 PAFAH1B2P68402 229 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 DEFA6Q01524 100 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TMEM267Q0VDI3 215 aaPredicted RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 H3F3CQ6NXT2 135 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 Q8IYB0 196 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CA13Q8N1Q1 262 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 DTWD2Q8NBA8 298 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ERGIC1Q969X5 290 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 PELI1Q96FA3 418 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 DUS3LQ96G46 650 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 DDOQ99489 341 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 S1PR5Q9H228 398 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ACOXLQ9NUZ1 547 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 RBFOX1Q9NWB1 397 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 RIF1Q5UIP0 2472 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 MASP2O00187 686 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 SULT1C4O75897 302 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 SPI1P17947 270 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 NAAAQ02083 359 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 FABP9Q0Z7S8 132 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 XKR7Q5GH72 579 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TOR2AQ5JU69 321 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OR2T2Q6IF00 324 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 LRRTM1Q86UE6 522 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 RBM45Q8IUH3 476 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 NUP37Q8NFH4 326 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CADM4Q8NFZ8 388 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OR5R1Q8NH85 324 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ZNF486Q96H40 463 aaPredicted RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 R3HDMLQ9H3Y0 253 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TAF9BQ9HBM6 251 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 PSENENQ9NZ42 101 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 KCNMB2Q9Y691 235 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ARL2-SNX15V9GYD0 113 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CACNA1BQ00975 2339 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 A0A1W2PN81 502 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 TCRBV3S1A0A5B6 114 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 PRSS37A4D1T9 235 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 SLC2A10O95528 541 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 KRASP01116 189 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 HOXC8P31273 242 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CHRNA7P36544 502 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 AGBL4Q5VU57 503 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OR10K2Q6IF99 312 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 FA2HQ7L5A8 372 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CDH26Q8IXH8 852 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OSR2Q8N2R0 312 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OR2L13Q8N349 312 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 OR10V1Q8NGI7 309 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 CMBLQ96DG6 245 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ITPKCQ96DU7 683 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 WDR61Q9GZS3 305 aaKnown RBP6.5□□□□□ -1.37
UPF2-203ENST00000397053 POMT2Q9UKY4 750 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 LMO7Q8WWI1 1683 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 MYH11P35749 1972 aa6.5□□□□□ -1.37
UPF2-203ENST00000397053 ROBO1Q9Y6N7 1651 aa6.49□□□□□ -1.37
UPF2-203ENST00000397053 MEX3AA1L020 520 aaKnown RBP6.49□□□□□ -1.37
UPF2-203ENST00000397053 CCSO14618 274 aa6.49□□□□□ -1.37
UPF2-203ENST00000397053 ITGBL1O95965 494 aaPredicted RBP6.49□□□□□ -1.37
UPF2-203ENST00000397053 HIST1H1CP16403 213 aaKnown RBP6.49□□□□□ -1.37
UPF2-203ENST00000397053 CD40P25942 277 aa6.49□□□□□ -1.37
UPF2-203ENST00000397053 FUT6P51993 359 aa6.49□□□□□ -1.37
UPF2-203ENST00000397053 MLF1P58340 268 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms