RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 FREM1Q5H8C1 2179 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 ARPC4-TTLL3A0A0A6YYG9 625 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 HIST1H3AP68431 136 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 CEACAM16Q2WEN9 425 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 HIST2H3PS2Q5TEC6 136 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 FAM27BQ5VT28 67 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 C9orf135Q5VTT2 229 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 LAMTOR1Q6IAA8 161 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 HIST2H3AQ71DI3 136 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 CLEC1AQ8NC01 280 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 OR2AE1Q8NHA4 323 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 FOXRED1Q96CU9 486 aaPredicted RBP13.22□□□□□ -0.29
GPC3-202ENST00000394299 WDR89Q96FK6 387 aaPredicted RBP13.22□□□□□ -0.29
GPC3-202ENST00000394299 BANF2Q9H503 90 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 PCDHGA1Q9Y5H4 931 aa13.22□□□□□ -0.29
GPC3-202ENST00000394299 HCKP08631 526 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 NR2C1P13056 603 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 FAHP16930 419 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 CTSSP25774 331 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 MRPS34P82930 218 aaKnown RBP13.21□□□□□ -0.29
GPC3-202ENST00000394299 ABLIM2Q6H8Q1 611 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 JMJD6Q6NYC1 403 aaPredicted RBP13.21□□□□□ -0.29
GPC3-202ENST00000394299 GLIPR1L1Q6UWM5 242 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 ZNF101Q8IZC7 436 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 PIAS4Q8N2W9 510 aaPredicted RBP13.21□□□□□ -0.29
GPC3-202ENST00000394299 GVQW1Q8N7I0 195 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 OR11H4Q8NGC9 324 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 PNPLA2Q96AD5 504 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 TINAGL1Q9GZM7 467 aaPredicted RBP13.21□□□□□ -0.29
GPC3-202ENST00000394299 ACTR6Q9GZN1 396 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 CHST6Q9GZX3 395 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 MYO7BQ6PIF6 2116 aa13.21□□□□□ -0.29
GPC3-202ENST00000394299 ARGFXA6NJG6 315 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 M0R135 149 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 NDUFB6O95139 128 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 VSIG10L2P0DP72 767 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 GNB3P16520 340 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 CASRP41180 1078 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 LHX2P50458 406 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 RAG2P55895 527 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 CD276Q5ZPR3 534 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 DOK3Q7L591 496 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 C1QL2Q7Z5L3 287 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 GPR137CQ8N3F9 429 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 GALNT16Q8N428 558 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 TMEM251Q8N6I4 163 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 INTS12Q96CB8 462 aaKnown RBP13.21□□□□□ -0.3
GPC3-202ENST00000394299 ZNF799Q96GE5 643 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 GINS4Q9BRT9 223 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 TMEM38BQ9NVV0 291 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 KLK13Q9UKR3 277 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 RAB22AQ9UL26 194 aa13.21□□□□□ -0.3
GPC3-202ENST00000394299 DNPH1O43598 174 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 CSN2P05814 226 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 CSF1P09603 554 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 ZNF32P17041 273 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 CCL1P22362 96 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 ERP29P30040 261 aaKnown RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 AIMP2Q13155 320 aaKnown RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 CDNFQ49AH0 187 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 STEAP1BQ6NZ63 245 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 CRIP3Q6Q6R5 217 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 VASH2Q86V25 355 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 GABRG1Q8N1C3 465 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 NUDCD2Q8WVJ2 157 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 C17orf50Q8WW18 174 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 SELENOIQ9C0D9 397 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 MRPS18CQ9Y3D5 142 aaKnown RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 A0A0A6YYD4 124 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 TNFRSF10AO00220 468 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 SGCEO43556 437 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 CYTIPO60759 359 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 TPPPO94811 219 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 SULT1A3P0DMM9 295 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 SULT1A4P0DMN0 295 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 FOXG1P55316 489 aaPredicted RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 CLDN18P56856 261 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 UBE2MP61081 183 aaKnown RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 UBE2V2Q15819 145 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 ZNF260Q3ZCT1 412 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 TSPO2Q5TGU0 170 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 TMPRSS7Q7RTY8 843 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 GRPEL2Q8TAA5 225 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 SGK3Q96BR1 496 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 C1orf147Q96MC9 270 aaPredicted RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 MRPS28Q9Y2Q9 187 aaKnown RBP13.2□□□□□ -0.3
GPC3-202ENST00000394299 CSAG2Q9Y5P2 127 aa13.2□□□□□ -0.3
GPC3-202ENST00000394299 MPIG6BO95866 241 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 IGLV3-1P01715 115 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 RLN1P04808 185 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 LPLP06858 475 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 AKAIN1P0CW23 69 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 OTX1P32242 354 aaPredicted RBP13.19□□□□□ -0.3
GPC3-202ENST00000394299 PLGLB1Q02325 96 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 OR52W1Q6IF63 320 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 PIP4P1Q86T03 277 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 SKA3Q8IX90 412 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 TUSC5Q8IXB3 177 aa13.19□□□□□ -0.3
GPC3-202ENST00000394299 ASCC1Q8N9N2 400 aaKnown RBP13.19□□□□□ -0.3
GPC3-202ENST00000394299 FNDC9Q8TBE3 224 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms