RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 REEP6Q96HR9 211 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 RDH12Q96NR8 316 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 MBOAT4Q96T53 435 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 TREM2Q9NZC2 230 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 MRPL15Q9P015 296 aaKnown RBP11.87□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF391Q9UJN7 358 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 IKZF2Q9UKS7 526 aa11.87□□□□□ -0.51
LIMS1-201ENST00000332345 LOC100130705A0A1B0GUX0 176 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 TMEM269A0A1B0GVZ9 245 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 C5orf63A6NC05 138 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 H0YL77 283 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 PSMD9O00233 223 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 MPZL2O60487 215 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 HLA-DPB1P04440 258 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 CA6P23280 308 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 PRSS12P56730 875 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 FAM3AP98173 230 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 KRTAP1-1Q07627 177 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 MZT1Q08AG7 82 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 RCN1Q15293 331 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 OR8G1Q15617 311 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 OCLNQ16625 522 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF322Q6U7Q0 402 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-201ENST00000332345 KLBQ86Z14 1044 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 CELF2-AS1Q8N7Q2 184 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 SPERTQ8NA61 448 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF555Q8NEP9 628 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 OR10AD1Q8NGE0 317 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 MEGF10Q96KG7 1140 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 OR8B4Q96RC9 309 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 YAE1D1Q9NRH1 226 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 FAM118AQ9NWS6 357 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 COPS3Q9UNS2 423 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 CACNG2Q9Y698 323 aa11.86□□□□□ -0.51
LIMS1-201ENST00000332345 SETD2Q9BYW2 2564 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-201ENST00000332345 NIPBLQ6KC79 2804 aaeCLIP11.86□□□□□ -0.51
LIMS1-201ENST00000332345 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-201ENST00000332345 LOC100289279A0A1B0GTE1 492 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 ANKRD30BLA7E2S9 258 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 A8MV72 311 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-201ENST00000332345 F5H5P2 479 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 SLC16A6O15403 523 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 MLNRO43193 412 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 ENTPD6O75354 484 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 MTNR1AP48039 350 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 GSK3AP49840 483 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 RIPPLY3P57055 190 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 PSMA6P60900 246 aaKnown RBP11.85□□□□□ -0.51
LIMS1-201ENST00000332345 MVKQ03426 396 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 GFOD2Q3B7J2 385 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF829Q3KNS6 432 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-201ENST00000332345 SPRNQ5BIV9 151 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 GALNT4Q8N4A0 578 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 FTMTQ8N4E7 242 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 CSNK2A3Q8NEV1 391 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 ITFG2Q969R8 447 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 ERGIC1Q969X5 290 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 Q96MT0 163 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 GCM1Q9NP62 436 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 TMEM106BQ9NUM4 274 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 SMPD3Q9NY59 655 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-201ENST00000332345 ZNF319Q9P2F9 582 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 WIPI2Q9Y4P8 454 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 TANC2Q9HCD6 1990 aa11.85□□□□□ -0.51
LIMS1-201ENST00000332345 LRRC30A6NM36 301 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 TGFAP01135 160 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 KRT8P05787 483 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 ANOS1P23352 680 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 CD200P41217 278 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 MMP16P51512 607 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 LRRC36Q1X8D7 754 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 C6orf52Q5T4I8 152 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 AVPI1Q5T686 147 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 PACRGLQ8N7B6 248 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 LINC01356Q8N9X3 169 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 PLPP7Q8NBV4 271 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 OR10H4Q8NGA5 316 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 OR56B2PQ8NGI1 322 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 CLDND2Q8NHS1 167 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 RHOXF1Q8NHV9 184 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 MSI2Q96DH6 328 aaKnown RBP11.84□□□□□ -0.51
LIMS1-201ENST00000332345 APOL4Q9BPW4 351 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 NARFLQ9H6Q4 476 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 DCLRE1BQ9H816 532 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 PCDHGB1Q9Y5G3 927 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 NPTNQ9Y639 398 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 MALRD1Q5VYJ5 2156 aa11.84□□□□□ -0.51
LIMS1-201ENST00000332345 A0A0U1RQV5 110 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 hCG_38984A0A1B0GV85 526 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 A0A1W2PQL4 384 aaPredicted RBP11.83□□□□□ -0.52
LIMS1-201ENST00000332345 INAFM1C9JVW0 142 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 SULT1C4O75897 302 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 IRF2P14316 349 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 GNALP38405 381 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 GATA4P43694 442 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 LMO4P61968 165 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 MAB21L1Q13394 359 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 ZNF181Q2M3W8 571 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 LPCAT4Q643R3 524 aa11.83□□□□□ -0.52
LIMS1-201ENST00000332345 FAM166AQ6J272 317 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms