RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 CMTM8Q8IZV2 173 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LIX1Q8N485 282 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ASCC1Q8N9N2 400 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LRRC75AQ8NAA5 344 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LYPD6BQ8NI32 183 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 LKAAEAR1Q8TD35 194 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 ACTRT1Q8TDG2 376 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SDR42E1Q8WUS8 393 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 C17orf50Q8WW18 174 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CAPSLQ8WWF8 208 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 PIBF1Q8WXW3 757 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 OPALINQ96PE5 141 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 XPO6Q96QU8 1125 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SH3GL3Q99963 347 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 OSBPL10Q9BXB5 764 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 UPF3BQ9BZI7 483 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 UCK2Q9BZX2 261 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 TPK1Q9H3S4 243 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 CHMP5Q9NZZ3 219 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 MYEF2Q9P2K5 600 aaKnown RBP2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SHPKQ9UHJ6 478 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 SLC17A4Q9Y2C5 497 aa2.09□□□□□ -2.07
HMGB1-201ENST00000326004 AFDNP55196 1824 aaKnown RBP2.09□□□□□ -2.08
HMGB1-201ENST00000326004 RAD50Q92878 1312 aa2.09□□□□□ -2.08
HMGB1-201ENST00000326004 CABIN1Q9Y6J0 2220 aa2.09□□□□□ -2.08
HMGB1-201ENST00000326004 SCN7AQ01118 1682 aa2.09□□□□□ -2.08
HMGB1-201ENST00000326004 FAM208AQ9UK61 1670 aaKnown RBP2.09□□□□□ -2.08
HMGB1-201ENST00000326004 PIK3C2GO75747 1445 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 RIC1Q4ADV7 1423 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 TEP1Q99973 2627 aaKnown RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 TMEM120BA0PK00 339 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 RSPH10B2B2RC85 870 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 RTL8CO15255 209 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 POLR3GO15318 223 aaPredicted RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 KDELR3O43731 214 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 SMC2O95347 1197 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 FGFR1OPO95684 399 aaKnown RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 CLIC3O95833 236 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 CD160O95971 181 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 IGLV2-23P01705 113 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 IFNW1P05000 195 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 RSPH10BP0C881 870 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 IL9P15248 144 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 MAGP20916 626 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 CD9P21926 228 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 CD82P27701 267 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 CCR8P51685 355 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 RWDD2BP57060 319 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 REG3AQ06141 175 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 SLAQ13239 276 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 C16orf72Q14CZ0 275 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 LRRC26Q2I0M4 334 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 FAM83EQ2M2I3 478 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 SLC25A25Q6KCM7 469 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 H3F3CQ6NXT2 135 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 MBOAT1Q6ZNC8 495 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 FAM122BQ7Z309 247 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 LHFPL3Q86UP9 236 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 PCP2Q8IVA1 136 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 IQCF2Q8IXL9 164 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 PUSL1Q8N0Z8 303 aaKnown RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 FAM58AQ8N1B3 248 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 JAGN1Q8N5M9 183 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 EID2Q8N6I1 236 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 FAM86B1Q8N7N1 296 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 TTC29Q8NA56 475 aaPredicted RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 OR56A4Q8NGH8 313 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 OR51L1Q8NGJ5 315 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 OR4A15Q8NGL6 344 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 OR5B3Q8NH48 314 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 ZNF596Q8TC21 504 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 SLC7A13Q8TCU3 470 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 GEMIN6Q8WXD5 167 aaKnown RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 NAT6Q93015 286 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 DNAJC19Q96DA6 116 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 STARD4Q96DR4 205 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 DUS3LQ96G46 650 aaKnown RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 MSANTD3Q96H12 275 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 JSRP1Q96MG2 331 aaPredicted RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 FOPNLQ96NB1 174 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 TSSK3Q96PN8 268 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 ACTR3CQ9C0K3 210 aaPredicted RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 LINC00597Q9H2U6 94 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 VCXQ9H320 206 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 GAL3ST2Q9H3Q3 398 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 BEX1Q9HBH7 125 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 RETNQ9HD89 108 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 LHX9Q9NQ69 397 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 PRSS16Q9NQE7 514 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 DYRK4Q9NR20 520 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 UXTQ9UBK9 157 aaPredicted RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 ZMAT5Q9UDW3 170 aaKnown RBP2.08□□□□□ -2.08
HMGB1-201ENST00000326004 TBX21Q9UL17 535 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 PSG11Q9UQ72 335 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 USP24Q9UPU5 2620 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 UBN2Q6ZU65 1347 aa2.08□□□□□ -2.08
HMGB1-201ENST00000326004 ANKRD17O75179 2603 aaKnown RBP2.07□□□□□ -2.08
HMGB1-201ENST00000326004 PLXNA3P51805 1871 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 TRAV39A0A0B4J263 110 aa2.07□□□□□ -2.08
HMGB1-201ENST00000326004 IGKV1D-13A0A0B4J2D9 117 aa2.07□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms