RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 SLC17A2O00624 439 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 GSTP1P09211 210 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 CTXN2P0C2S0 81 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 KRTDAPP60985 99 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 SLC35A1P78382 337 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 CLEC12BQ2HXU8 276 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 C1orf140Q5VVS0 124 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 FBXL6Q8N531 539 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 ZDHHC22Q8N966 263 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 MOB1AQ9H8S9 216 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 FOXJ3Q9UPW0 622 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 SLC17A4Q9Y2C5 497 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 FCMRO60667 390 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 RFC3P40938 356 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 METAP1P53582 386 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 MZT1Q08AG7 82 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 TRIM61Q5EBN2 209 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 TMEM268Q5VZI3 342 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 OR2A2Q6IF42 318 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 MARCH3Q86UD3 253 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 ARRDC1Q8N5I2 433 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 INTS12Q96CB8 462 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 NPAS1Q99742 590 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 EDEM2Q9BV94 578 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 NXF2Q9GZY0 626 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 SLC35B3Q9H1N7 401 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 MTFP1Q9UDX5 166 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 PIGLQ9Y2B2 252 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 CCDC187A0A096LP49 1063 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 M0R143 59 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 GATCO43716 136 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 ALOX12BO75342 701 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 LIMS3P0CW19 117 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 LIMS4P0CW20 117 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 RPL29P47914 159 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 TGFBR3Q03167 851 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 PLGLAQ15195 96 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 LYPD8Q6UX82 237 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 OR51H1Q8NH63 302 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 TINAGL1Q9GZM7 467 aaPredicted RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 UBE2ZQ9H832 354 aaPredicted RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 UQCC1Q9NVA1 299 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 POMT1Q9Y6A1 747 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 ZNF816-ZNF321PA0A0X1KG74 233 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 LINC01565O15544 149 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 EIF4E2O60573 245 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 NAT2P11245 290 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 IFITM3Q01628 133 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 NHLRC1Q6VVB1 395 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 CATSPERDQ86XM0 798 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 ZNF321PQ8N8H1 164 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 SLC24A4Q8NFF2 622 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 HGDQ93099 445 aa10.41□□□□□ -0.74
VPS39-201ENST00000318006 USB1Q9BQ65 265 aaKnown RBP10.41□□□□□ -0.74
VPS39-201ENST00000318006 ELOA3CA0A087WX78 387 aaPredicted RBP10.4□□□□□ -0.74
VPS39-201ENST00000318006 XRCC2O43543 280 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 PLPP2O43688 288 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 TRAF3IP2O43734 574 aaPredicted RBP10.4□□□□□ -0.74
VPS39-201ENST00000318006 SLC2A1P11166 492 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 SRFP11831 508 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 GLULP15104 373 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 MPGP29372 298 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 MVDP53602 400 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 CDK5Q00535 292 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 MRM1Q6IN84 353 aaKnown RBP10.4□□□□□ -0.74
VPS39-201ENST00000318006 CAMKMTQ7Z624 323 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 GJC3Q8NFK1 279 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 HMGCLL1Q8TB92 370 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 PRRX2Q99811 253 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 ARHGDIGQ99819 225 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 SLC5A6Q9Y289 635 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 TMEM184BQ9Y519 407 aaPredicted RBP10.4□□□□□ -0.74
VPS39-201ENST00000318006 A0A1W2PPC4 97 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 OR8U8P0C7N1 319 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 SULT1A3P0DMM9 295 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 SULT1A4P0DMN0 295 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 CD22P20273 847 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 SELENOPP49908 381 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 CASP6P55212 293 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 DHRS2Q13268 280 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 RAB35Q15286 201 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 NKAIN1Q4KMZ8 207 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 PLXDC2Q6UX71 529 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 CBLN2Q8IUK8 224 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 KCNJ15Q99712 375 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 OR51B6Q9H340 312 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 WSB1Q9Y6I7 421 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 ARL2-SNX15V9GYD0 113 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 CST2P09228 141 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 EIF1P41567 113 aaKnown RBP10.4□□□□□ -0.74
VPS39-201ENST00000318006 HIST1H3AP68431 136 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 TIGITQ495A1 244 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 ARIH2OSQ8N7S6 290 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 ABHD1Q96SE0 405 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 SLC17A5Q9NRA2 495 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 WBP1LQ9NX94 342 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 IL20Q9NYY1 176 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 A4GNTQ9UNA3 340 aa10.4□□□□□ -0.74
VPS39-201ENST00000318006 UPK1AO00322 258 aa10.4□□□□□ -0.75
VPS39-201ENST00000318006 MBTPS2O43462 519 aa10.4□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms