RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 MICBQ29980 383 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 TEX36Q5VZQ5 186 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 VMO1Q7Z5L0 202 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 FAM90A1Q86YD7 464 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 C1QL4Q86Z23 238 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 LINC00346Q8IVM7 164 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 SLC15A3Q8IY34 581 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 OR6V1Q8N148 313 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 OR4C15Q8NGM1 316 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 OR5R1Q8NH85 324 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 ST8SIA4Q92187 359 aa12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 GMPR2Q9P2T1 348 aaKnown RBP12.18□□□□□ -0.46
CCDC88B-201ENST00000301897 hCG_1807616A0A1W2PRN6 198 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 LHBP01229 141 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 ZNF823P16415 610 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 NOS3P29474 1203 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 DDOSTP39656 456 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 SMIM11AP58511 58 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 ZNF92Q03936 586 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 KRT72Q14CN4 511 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 RFX4Q33E94 735 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 C11orf88Q6PI97 169 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 DRAM2Q6UX65 266 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 SLC36A1Q7Z2H8 476 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 REC114Q7Z4M0 266 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 PIP4P2Q8N4L2 257 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 GCSAMQ8N6F7 178 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 FANK1Q8TC84 345 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 FAM162AQ96A26 154 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 RCN3Q96D15 328 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 NMNAT3Q96T66 252 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 HOPXQ9BPY8 73 aaPredicted RBP12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 RASSF4Q9H2L5 321 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 VIPAS39Q9H9C1 493 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 PNRC2Q9NPJ4 139 aaKnown RBP12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 RPRD1BQ9NQG5 326 aaKnown RBP12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 ZNRD1Q9P1U0 126 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 ONECUT1Q9UBC0 465 aa12.17□□□□□ -0.46
CCDC88B-201ENST00000301897 ZNF816-ZNF321PA0A0X1KG74 233 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 BHLHE40O14503 412 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 PAHP00439 452 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 GRPP07492 148 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 HIST1H1CP16403 213 aaKnown RBP12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 Q6ZTK2 550 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 HDXQ7Z353 690 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 NAA40Q86UY6 237 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 PDZD9Q8IXQ8 264 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 LY6G5BQ8NDX9 201 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 RP9Q8TA86 221 aaKnown RBP12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 RNPEPL1Q9HAU8 725 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 NDUFAF4Q9P032 175 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 PLXNB1O43157 2135 aa12.16□□□□□ -0.46
CCDC88B-201ENST00000301897 TRBV4-1A0A0J9YWV2 114 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 ANKRD61A6NGH8 418 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 TIPRLO75663 272 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OPN1MWP04001 364 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OPN1MW2P0DN77 364 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OPN1MW3P0DN78 364 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 H2AFXP16104 143 aaPredicted RBP12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OTX1P32242 354 aaPredicted RBP12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 NAA10P41227 235 aaPredicted RBP12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 EGR3Q06889 387 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 CGB2Q6NT52 195 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 DTX3Q8N9I9 347 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OR8S1Q8NH09 359 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OR4K13Q8NH42 304 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 C12orf43Q96C57 262 aaKnown RBP12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 DHRS1Q96LJ7 313 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 IFT27Q9BW83 186 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 OR52D1Q9H346 318 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 FBLN5Q9UBX5 448 aa12.15□□□□□ -0.46
CCDC88B-201ENST00000301897 ANKRD30BLA7E2S9 258 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 RNASEK-C17orf49H0YIS7 233 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 NPFFO15130 113 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 XRCC2O43543 280 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 NDUFB3O43676 98 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 ALX3O95076 343 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 GABRA5P31644 462 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 IFNGR2P38484 337 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 GSK3BP49841 420 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 SLC7A2P52569 658 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 HOXA4Q00056 320 aaPredicted RBP12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 SF3A3Q12874 501 aaKnown RBP eCLIP12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 HERPUD1Q15011 391 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 SEC23BQ15437 767 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 PCK2Q16822 640 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 BEAN1Q3B7T3 259 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 SNAI3Q3KNW1 292 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 LRRC10Q5BKY1 277 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 GLYATL3Q5SZD4 288 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 KPRPQ5T749 579 aaPredicted RBP12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 C1orf122Q6ZSJ8 110 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 ZNF826PQ6ZT77 177 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 OR56B2PQ8NGI1 322 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 OR2AE1Q8NHA4 323 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 MAP6Q96JE9 813 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 KCTD14Q9BQ13 255 aaPredicted RBP12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 NSRP1Q9H0G5 558 aaKnown RBP12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 FGFR1OP2Q9NVK5 253 aa12.14□□□□□ -0.47
CCDC88B-201ENST00000301897 PRPF19Q9UMS4 504 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms