RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 OR2B11Q5JQS5 317 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 METTL27Q8N6F8 245 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 OR51A4Q8NGJ6 313 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 OR51A2Q8NGJ7 313 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 OR1L3Q8NH93 324 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 NT5CQ8TCD5 201 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 RHOVQ96L33 236 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SLC17A9Q9BYT1 436 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GLIPR2Q9H4G4 154 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 FAM166BA8MTA8 275 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GCGP01275 180 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 BCL6P41182 706 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 ERVFC1-1P60608 527 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 YBX1P67809 324 aaKnown RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 ZIC1Q15915 447 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 HES3Q5TGS1 186 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 Q6ZRG5 221 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 TUSC5Q8IXB3 177 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 GALNT16Q8N428 558 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 OR2A1Q8NGT9 310 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LGALS14Q8TCE9 139 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 TUBA4BQ9H853 241 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 CSAG2Q9Y5P2 127 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 UTRNP46939 3433 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 HSFX4A0A1B0GTS1 333 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 HSFX3A0A1B0GWH4 333 aaPredicted RBP5.82□□□□□ -1.48
VPS35-201ENST00000299138 GPR31O00270 319 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LEFTY2O00292 366 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LCATP04180 440 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 TIMP2P16035 220 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SRMP19623 302 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 SRPXP78539 464 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 AESQ08117 197 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 BAP18Q8IXM2 172 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LINC00469Q8N7U9 141 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 IER2Q9BTL4 223 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 DEC1Q9P2X7 70 aa5.82□□□□□ -1.48
VPS35-201ENST00000299138 LOC107984156A0A0G2JMH3 177 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 M0QYG6 137 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ACHEP22303 614 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 DPP4P27487 766 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 SHC1P29353 583 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 SRP9P49458 86 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 ASCL1P50553 236 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 HHEXQ03014 270 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 IZUMO4Q1ZYL8 232 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 MICBQ29980 383 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ARL17AQ8IVW1 177 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ARL14EPQ8N8R7 260 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 CYB561A3Q8NBI2 242 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 C4orf36Q96KX1 117 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 EGLN3Q9H6Z9 239 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 KCNK12Q9HB15 430 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 SPHK2Q9NRA0 654 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 MARCH5Q9NX47 278 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 RNF150Q9ULK6 438 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ELOA3CA0A087WX78 387 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 SLC17A2O00624 439 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PIAS2O75928 621 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CDS2O95674 445 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 MT-ATP6P00846 226 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 GP1BAP07359 652 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 DEFA4P12838 97 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FOLR2P14207 255 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 RABGGTBP53611 331 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CLDN12P56749 244 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PPP1CBP62140 327 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 RPS26P62854 115 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 ALKBH1Q13686 389 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 IAH1Q2TAA2 248 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 SLC36A2Q495M3 483 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ASCL4Q6XD76 172 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 TMEM251Q8N6I4 163 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 OR5L2Q8NGL0 311 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FAM174AQ8TBP5 190 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 EID2BQ96D98 161 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 RSG1Q9BU20 258 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 TSC2P49815 1807 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 LOC100289279A0A1B0GTE1 492 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 DEGS1O15121 323 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CSTAP01040 98 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 SNRPBP14678 240 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 GALNSP34059 522 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PMELP40967 661 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 GALR1P47211 349 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 GAS1P54826 345 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 FOXK1P85037 733 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PHLDA2Q53GA4 152 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 LEMD1Q68G75 181 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 CDC20BQ86Y33 519 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 APCDD1Q8J025 514 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 C10orf111Q8N326 155 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ACOT4Q8N9L9 421 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 ZNF296Q8WUU4 475 aaPredicted RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 CMSS1Q9BQ75 279 aaKnown RBP5.81□□□□□ -1.48
VPS35-201ENST00000299138 PLEKHA2Q9HB19 425 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 PITPNC1Q9UKF7 332 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 MMP24Q9Y5R2 645 aa5.81□□□□□ -1.48
VPS35-201ENST00000299138 J3KTA2 159 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms