RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 Q9N2K0 584 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CLEC18AA5D8T8 446 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 NCBP2LA6PVI3 153 aaKnown RBP10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 DUSP11O75319 330 aaKnown RBP10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CST4P01036 141 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 HTRA3P83110 453 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CLEC18CQ8NCF0 446 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 HGDQ93099 445 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 LRFN3Q9BTN0 628 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CBLCQ9ULV8 474 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 GPR34Q9UPC5 381 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CRISP2P16562 243 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 EDDM3AQ14507 147 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 AFMIDQ63HM1 303 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 SCGB1D4Q6XE38 83 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CDC20BQ86Y33 519 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 SLC46A2Q9BY10 475 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 C7orf77A4D0Y5 90 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 AGBL4Q5VU57 503 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 KIAA0895LQ68EN5 471 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 FIGLAQ6QHK4 219 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 FUNDC1Q8IVP5 155 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 TSACCQ96A04 125 aaPredicted RBP10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 NEURL3Q96EH8 262 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 SLC22A12Q96S37 553 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 SOWAHBA6NEL2 793 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 PRAMEF25A6NGN4 478 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 PRKRAO75569 313 aaKnown RBP10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 CTSSP25774 331 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 TAS2R60P59551 318 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 TIAL1Q01085 375 aaKnown RBP eCLIP10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 PRAMEF5Q5TYX0 476 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 PRAMEF6Q5VXH4 476 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 BCL2L2Q92843 193 aaPredicted RBP10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 RAB37Q96AX2 223 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 ATOH8Q96SQ7 321 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 HAPLN2Q9GZV7 340 aa10.71□□□□□ -0.69
SHROOM3-201ENST00000296043 IFITM5A6NNB3 132 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 GSTP1P09211 210 aaKnown RBP10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 SRD5A3Q9H8P0 318 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 LOC105371267A0A1B0GV96 52 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 P04436 131 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 GLULP15104 373 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 SURF2Q15527 256 aaPredicted RBP10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 EMG1Q92979 244 aaKnown RBP10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 ERGIC1Q969X5 290 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 ORAI1Q96D31 301 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 A0A1B0GUL6 1792 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 COCHO43405 550 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 DCXRQ7Z4W1 244 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 GSN-AS1Q9NRJ2 163 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 NUP188Q5SRE5 1749 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 A0A1W2PP55 124 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 IL5P05113 134 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 HLA-DRB3P79483 266 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 OR52E1Q8NGJ3 308 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 PRSS3P2Q8NHM4 247 aa10.71□□□□□ -0.7
SHROOM3-201ENST00000296043 CLN3Q13286 438 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 BTNL3Q6UXE8 466 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 RANBP10Q6VN20 620 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 RNF113BQ8IZP6 322 aaKnown RBP10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 ADAT3Q96EY9 351 aaPredicted RBP10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 NXPH2O95156 264 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 TEAD1P28347 426 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 MAP1LC3CQ9BXW4 147 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 TMEM191AQ9H0A3 160 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 PRSS16Q9NQE7 514 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 ZNF275Q9NSD4 429 aaPredicted RBP10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 TMEM140Q9NV12 185 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 GVINP1Q7Z2Y8 2422 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 SPATA31A1Q5TZJ5 1347 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 FAM155AB1AL88 458 aaPredicted RBP10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 H7C2G1 150 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 LIMS3P0CW19 117 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 LIMS4P0CW20 117 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 PCBD1P61457 104 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 DLEU7Q6UYE1 221 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 MBD3L1Q8WWY6 194 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 ZNF256Q9Y2P7 627 aaPredicted RBP10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 PLIN4Q96Q06 1357 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 DYSFO75923 2080 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 GJB5O95377 273 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 REC114Q7Z4M0 266 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 ST6GALNAC3Q8NDV1 305 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 AP5S1Q9NUS5 200 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 SOX21Q9Y651 276 aaPredicted RBP10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 LEFTY2O00292 366 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 CA2P00918 260 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 DHRS2Q13268 280 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 C9orf131Q5VYM1 1079 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 SMIM19Q96E16 107 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 CXorf36Q9H7Y0 433 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 MYADML2A6NDP7 307 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 DEGS1O15121 323 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 COX7A2P2O60397 106 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 NDUFB6O95139 128 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 MMP15P51511 669 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 SLC16A14Q7RTX9 510 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 OR4A4PQ8NGN8 299 aa10.7□□□□□ -0.7
SHROOM3-201ENST00000296043 ACER3Q9NUN7 267 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms