RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 OTX1P32242 354 aaPredicted RBP14.37□□□□□ -0.11
USP4-201ENST00000265560 ART1P52961 327 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 TPTEP56180 551 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 GLT8D1Q68CQ7 371 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 ELF5Q9UKW6 265 aaPredicted RBP14.37□□□□□ -0.11
USP4-201ENST00000265560 FOXJ3Q9UPW0 622 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 ACACBO00763 2458 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 MEIOCA2RUB1 952 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 SLC17A2O00624 439 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 ARSBP15848 533 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 BDKRB2P30411 391 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 TMEM69Q5SWH9 247 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 RTN4RL2Q86UN3 420 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 OR14K1Q8NGZ2 314 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 PIGTQ969N2 578 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 SARAFQ96BY9 339 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 RNF170Q96K19 258 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 FAIMQ9NVQ4 179 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 SH3BGRL2Q9UJC5 107 aa14.37□□□□□ -0.11
USP4-201ENST00000265560 IGKV1-9A0A0C4DH69 117 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 TMEM272A0A1B0GTI8 110 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 OR6C6A6NF89 314 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 PLATP00750 562 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 HCKP08631 526 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 PER3P56645 1201 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 FBXW9Q5XUX1 488 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 S100A16Q96FQ6 103 aaKnown RBP14.36□□□□□ -0.11
USP4-201ENST00000265560 KLK11Q9UBX7 282 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 DIDO1Q9BTC0 2240 aaKnown RBP14.36□□□□□ -0.11
USP4-201ENST00000265560 A0A1W2PP11 408 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 FUOMA2VDF0 154 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 AQP7O14520 342 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 RAB3AP20336 220 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 CTSSP25774 331 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 RAB25P57735 213 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 TBR1Q16650 682 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 SLC25A28Q96A46 364 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 REEP6Q96HR9 211 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 LINC00470Q9BZP3 86 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 ATG5Q9H1Y0 275 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 CACNA1AO00555 2505 aa14.36□□□□□ -0.11
USP4-201ENST00000265560 NGFP01138 241 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 DDOSTP39656 456 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 ZNF92Q03936 586 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 PRR30Q53SZ7 412 aaPredicted RBP14.35□□□□□ -0.11
USP4-201ENST00000265560 MOB1AQ9H8S9 216 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 DKK4Q9UBT3 224 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 HLA-DQB1P01920 261 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 OR3A4PP47883 348 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 CXADRP78310 365 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 HLXQ14774 488 aaPredicted RBP14.35□□□□□ -0.11
USP4-201ENST00000265560 UBE2V2Q15819 145 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 DOK3Q7L591 496 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 CADM3Q8N126 398 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 OR5AS1Q8N127 324 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 PAQR4Q8N4S7 273 aaPredicted RBP14.35□□□□□ -0.11
USP4-201ENST00000265560 CMBLQ96DG6 245 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 GMPPAQ96IJ6 420 aaPredicted RBP14.35□□□□□ -0.11
USP4-201ENST00000265560 TMEM138Q9NPI0 162 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 GPR173Q9NS66 373 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 B3GNT2Q9NY97 397 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 PKD1L2Q7Z442 2459 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 CDK2AP1O14519 115 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 FSTP19883 344 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 GUCA2AQ02747 115 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 MOGAT2Q3SYC2 334 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 SLC36A2Q495M3 483 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 FAM214BQ7L5A3 538 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 ADGRE4PQ86SQ3 457 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 MYPOPQ86VE0 399 aaPredicted RBP14.35□□□□□ -0.11
USP4-201ENST00000265560 ANGPTL5Q86XS5 388 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 OR52I2Q8NH67 350 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 GPER1Q99527 375 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 NLKQ9UBE8 527 aa14.35□□□□□ -0.11
USP4-201ENST00000265560 CELA3BP08861 270 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 CALCBP10092 127 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 ZNF93P35789 620 aaPredicted RBP14.34□□□□□ -0.11
USP4-201ENST00000265560 KIR2DL2P43627 348 aaPredicted RBP14.34□□□□□ -0.11
USP4-201ENST00000265560 PTH2RP49190 550 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 PCBD1P61457 104 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 ACSF3Q4G176 576 aaPredicted RBP14.34□□□□□ -0.11
USP4-201ENST00000265560 PYHIN1Q6K0P9 492 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 FAAP20Q6NZ36 180 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 UTS2BQ765I0 119 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 BATF2Q8N1L9 274 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 OR10A2Q9H208 303 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 TRAV18A0A075B6X5 111 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 K7ENP7 123 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 RRP8O43159 456 aaKnown RBP14.34□□□□□ -0.11
USP4-201ENST00000265560 UBL3O95164 117 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 EDN3P14138 238 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 KIR2DL3P43628 341 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 TNK1Q13470 666 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 FAM166AQ6J272 317 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 INO80CQ6PI98 192 aaPredicted RBP14.34□□□□□ -0.11
USP4-201ENST00000265560 DRAM2Q6UX65 266 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 NCCRP1Q6ZVX7 275 aaPredicted RBP14.34□□□□□ -0.11
USP4-201ENST00000265560 C1QL2Q7Z5L3 287 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 ZNF584Q8IVC4 421 aa14.34□□□□□ -0.11
USP4-201ENST00000265560 ACBD4Q8NC06 268 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms