RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 EFNA3P52797 238 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 HSD11B2P80365 405 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 FOXK1P85037 733 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 ROM1Q03395 351 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 FOXF1Q12946 379 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 CCDC157Q569K6 752 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 LCN10Q6JVE6 187 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 FAM57BQ71RH2 274 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 WDFY1Q8IWB7 410 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 TMEM104Q8NE00 496 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 OR1N1Q8NGS0 311 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 ALX4Q9H161 411 aaPredicted RBP11.26□□□□□ -0.61
LIG1-201ENST00000263274 C8orf33Q9H7E9 229 aaPredicted RBP11.26□□□□□ -0.61
LIG1-201ENST00000263274 G6PC2Q9NQR9 355 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 ASH2LQ9UBL3 628 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 CA14Q9ULX7 337 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 MRPS28Q9Y2Q9 187 aaKnown RBP11.26□□□□□ -0.61
LIG1-201ENST00000263274 ZNF878C9JN71 531 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 F5H5K5 113 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 TSPAN2O60636 221 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 ZNF354AO60765 605 aaPredicted RBP11.26□□□□□ -0.61
LIG1-201ENST00000263274 FBXO24O75426 580 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 PSMB6P28072 239 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 GUCA1AP43080 201 aaPredicted RBP11.26□□□□□ -0.61
LIG1-201ENST00000263274 DCAF7P61962 342 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 IKZF1Q13422 519 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 NKAPLQ5M9Q1 402 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 OR5T2Q8NGG2 359 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 RAB3CQ96E17 227 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 S100A13Q99584 98 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 SMIM3Q9BZL3 60 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 C1orf198Q9H425 327 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 METTL7AQ9H8H3 244 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 THADAQ6YHU6 1953 aa11.26□□□□□ -0.61
LIG1-201ENST00000263274 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 RNF222A6NCQ9 220 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 MS4A18H0YCH9 400 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 SCGB1D2O95969 90 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 GUSBP08236 651 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 GLI4P10075 376 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 BCKDHBP21953 392 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 DAP3P51398 398 aaKnown RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 PNLIPRP2P54317 469 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 CLDN6P56747 220 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 PPIAP62937 165 aaKnown RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 GUCA2BQ16661 112 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 MS4A18Q3C1V0 323 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 CBLN2Q8IUK8 224 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 DNTTIP1Q9H147 329 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 SLC2A4RGQ9NR83 387 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 PPP4R1LQ9P1A2 415 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 CPED1A4D0V7 1026 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 A6NIZ1 184 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 HSPB2A8KAH6 182 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 RER1O15258 196 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 ZBTB25P24278 435 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 FASLGP48023 281 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 DHPSP49366 369 aaPredicted RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 RAP1BP61224 184 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 RAP1AP62834 184 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 UNC119Q13432 240 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 HSPB2Q16082 182 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 ZNF260Q3ZCT1 412 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 FAM166AQ6J272 317 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 LMAN1LQ9HAT1 526 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 TMEM200CA6NKL6 621 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 C2CD4DB7Z1M9 353 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 TTRP02766 147 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 HEXBP07686 556 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 HOXB1P14653 301 aaPredicted RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 OR3A4PP47883 348 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 ZNF41P51814 821 aaPredicted RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 PRSS12P56730 875 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 CSNK2A1P68400 391 aaPredicted RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.25□□□□□ -0.61
LIG1-201ENST00000263274 RAB11FIP2Q7L804 512 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 SLC25A42Q86VD7 318 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 CSNK2A3Q8NEV1 391 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 OR51T1Q8NGJ9 327 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 ZNF285Q96NJ3 590 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 GPR84Q9NQS5 396 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 SDHAF3Q9NRP4 125 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 FAM96BQ9Y3D0 163 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 RHBDD3Q9Y3P4 386 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 ZDBF2Q9HCK1 2354 aa11.25□□□□□ -0.61
LIG1-201ENST00000263274 A0A1B0GTQ1 180 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 GP1BAP07359 652 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 SERPINA2P20848 420 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 CCR5P51681 352 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 RNF4P78317 190 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 SSBP1Q04837 148 aaKnown RBP11.24□□□□□ -0.61
LIG1-201ENST00000263274 MFAP5Q13361 173 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 PRAMEF20Q5VT98 475 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 FDX2Q6P4F2 183 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 MYO7BQ6PIF6 2116 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 DNM1P46Q6ZS02 220 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 NKAIN3Q8N8D7 197 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 OR5H2Q8NGV7 314 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 STT3BQ8TCJ2 826 aa11.24□□□□□ -0.61
LIG1-201ENST00000263274 TMEM59Q9BXS4 323 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms