RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 AKIP1Q9NQ31 210 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF275Q9NSD4 429 aaPredicted RBP10.23□□□□□ -0.77
VPS4A-201ENST00000254950 DEPPQ9NTK1 212 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ST6GALNAC2Q9UJ37 374 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 RAMP1O60894 148 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 DHRS3O75911 302 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 RAD52P43351 418 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 Q6ZTK2 550 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 CATSPERDQ86XM0 798 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 OR5AS1Q8N127 324 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ZFP62Q8NB50 900 aaPredicted RBP10.23□□□□□ -0.77
VPS4A-201ENST00000254950 NINJ1Q92982 152 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 SLC6A7Q99884 636 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ST6GALNAC5Q9BVH7 336 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 MRPL22Q9NWU5 206 aaKnown RBP10.23□□□□□ -0.77
VPS4A-201ENST00000254950 DIRAS3O95661 229 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ROM1Q03395 351 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 MEF2DQ14814 521 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 C2orf76Q3KRA6 126 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF718Q3SXZ3 478 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 OR8B12Q8NGG6 310 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 KLHDC3Q9BQ90 382 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 CHIAQ9BZP6 476 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 B3GAT1Q9P2W7 334 aa10.23□□□□□ -0.77
VPS4A-201ENST00000254950 SIRT4Q9Y6E7 314 aaPredicted RBP10.23□□□□□ -0.77
VPS4A-201ENST00000254950 TIMP4Q99727 224 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 RTL8AQ9BWD3 113 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 NUDT15Q9NV35 164 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 PTGDSP41222 190 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 GAS1P54826 345 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CD83Q01151 205 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 MAB21L1Q13394 359 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 TMEM211Q6ICI0 200 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ANKRD16Q6P6B7 361 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 LHFPL2Q6ZUX7 228 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 FAM214BQ7L5A3 538 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 LYSMD2Q8IV50 215 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CMTM4Q8IZR5 234 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 SLC30A7Q8NEW0 376 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CASTOR1Q8WTX7 329 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 SPSB1Q96BD6 273 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CCDC120Q96HB5 630 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 DMRTB1Q96MA1 342 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CMSS1Q9BQ75 279 aaKnown RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 OR10A4Q9H209 315 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 TP63Q9H3D4 680 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 BANF2Q9H503 90 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 KCNIP1Q9NZI2 227 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CYB5R1Q9UHQ9 305 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 FBXO9Q9UK97 447 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ARID1AO14497 2285 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ARPC4-TTLL3A0A0A6YYG9 625 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 LRRC3CA6NJW4 275 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 M0R1B8 84 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 HLA-DMAP28067 261 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 DCTDP32321 178 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 MFGE8Q08431 387 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF362Q5T0B9 420 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 TMEM91Q6ZNR0 172 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 WFDC8Q8IUA0 241 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 OR51A2Q8NGJ7 313 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 OR2AE1Q8NHA4 323 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CHPT1Q8WUD6 406 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 EXTL1Q92935 676 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 AMELYQ99218 206 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 NPAS1Q99742 590 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 RSPO3Q9BXY4 272 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 OR2H1Q9GZK4 316 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 DNAH14Q0VDD8 3507 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 C5orf51A6NDU8 294 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CD1AP06126 327 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 HOXD4P09016 255 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ZNF35P13682 527 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 NRARPQ7Z6K4 114 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 TRAPPC6BQ86SZ2 158 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CCDC190Q86UF4 302 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ZDHHC23Q8IYP9 409 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 PIAS4Q8N2W9 510 aaPredicted RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 OR1J1Q8NGS3 322 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 CAPSLQ8WWF8 208 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 PSMF1Q92530 271 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 ZMAT3Q9HA38 289 aaKnown RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 RBFOX1Q9NWB1 397 aaKnown RBP10.22□□□□□ -0.77
VPS4A-201ENST00000254950 GHRLQ9UBU3 117 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 NUBP2Q9Y5Y2 271 aa10.22□□□□□ -0.77
VPS4A-201ENST00000254950 SPEGQ15772 3267 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 A0A1W2PR80 420 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 WDR1O75083 606 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 EIF4EP06730 217 aaKnown RBP10.21□□□□□ -0.77
VPS4A-201ENST00000254950 GSTT2P0CG29 244 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 SFTPCP11686 197 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 CDK2P24941 298 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 GIFP27352 417 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 ETV6P41212 452 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 ID4P47928 161 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 TAS2R20P59543 309 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 NANOS3P60323 173 aaKnown RBP10.21□□□□□ -0.77
VPS4A-201ENST00000254950 OR8G1Q15617 311 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 OR10K2Q6IF99 312 aa10.21□□□□□ -0.77
VPS4A-201ENST00000254950 SLC39A7Q92504 469 aa10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms