RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 OR2AE1Q8NHA4 323 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 PATE1Q8WXA2 126 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 APOBEC3DQ96AK3 386 aaPredicted RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 RFPL4AA6NLU0 287 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 RFPL4AL1F8VTS6 287 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 DHHO43323 396 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 CXCL13O43927 109 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 RELQ04864 619 aaPredicted RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 MPPED2Q15777 294 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 FAM74A1Q5RGS3 127 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ABI3BPQ7Z7G0 1075 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 SMRP1Q8NCR6 262 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 NPEPL1Q8NDH3 523 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 BPIFCQ8NFQ6 507 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 S1PR3Q99500 378 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 P4HTMQ9NXG6 502 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ANKRD10Q9NXR5 420 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 EXOGQ9Y2C4 368 aaKnown RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 ZNF831Q5JPB2 1677 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 CCSO14618 274 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 HLA-AP01891 365 aaKnown RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 APEX1P27695 318 aaKnown RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 TPPP2P59282 170 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 SQSTM1Q13501 440 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TBPL2Q6SJ96 375 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 APOOLQ6UXV4 268 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TCTEX1D1Q8N7M0 179 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 OR10J5Q8NHC4 309 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 Q96M85 177 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 NRSN2Q9GZP1 204 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ZNF385DQ9H6B1 395 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 LANCL2Q9NS86 450 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 GDF2Q9UK05 429 aaPredicted RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 MTCH2Q9Y6C9 303 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 STRCP1A6NGW2 1772 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 UBR3Q6ZT12 1888 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 M0R1B8 84 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 NRG2O14511 850 aaPredicted RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 CTGFP29279 349 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 SMIM21Q3B7S5 101 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TMEM65Q6PI78 240 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 FBXW12Q6X9E4 464 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 C19orf35Q6ZS72 473 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 LINC00346Q8IVM7 164 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 DEFB124Q8NES8 71 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 NXF2Q9GZY0 626 aaKnown RBP11.55□□□□□ -0.56
USP40-201ENST00000251722 UPK1AO00322 258 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ELK1P19419 428 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ACSM1Q08AH1 577 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 DOC2BQ14184 412 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TAF9Q16594 264 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 GLIPR1L1Q6UWM5 242 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 WFDC8Q8IUA0 241 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 CCL4L1Q8NHW4 92 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ST6GAL2Q96JF0 529 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TEAD3Q99594 435 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 ATF6BQ99941 703 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 PLA2G2FQ9BZM2 168 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 TREM2Q9NZC2 230 aa11.55□□□□□ -0.56
USP40-201ENST00000251722 A0A0B4J2A0 478 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ZNF729A6NN14 1252 aaPredicted RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 METTL15P1P0C7V9 234 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 C21orf33P30042 268 aaPredicted RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 ZNF266Q14584 549 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SFRP5Q5T4F7 317 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 TRAT1Q6PIZ9 186 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SYT9Q86SS6 491 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ZDHHC23Q8IYP9 409 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 HES7Q9BYE0 225 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 TMEM30AQ9NV96 361 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SHPKQ9UHJ6 478 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 RCE1Q9Y256 329 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 R4GMQ9 66 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 B4E171 279 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 NME2P22392 152 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 PRTGQ2VWP7 1150 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 GLYR1Q49A26 553 aaPredicted RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 NOXO1Q8NFA2 376 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 OR6K3Q8NGY3 331 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ZNF775Q96BV0 537 aaPredicted RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 SHARPINQ9H0F6 387 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 TIMM8BQ9Y5J9 83 aaPredicted RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 A0A1B0GTQ1 180 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ACOT8O14734 319 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 PMS2P2O95744 297 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SPP1P10451 314 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SPNP16150 400 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 NDUFB7P17568 137 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SRMP19623 302 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ELFN2Q5R3F8 820 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ACOT7LQ6ZUV0 252 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 FUNDC1Q8IVP5 155 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 COX14Q96I36 57 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ZNF355PQ9NSJ1 428 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 NKX2-2O95096 273 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 ABCD3P28288 659 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 GSK3AP49840 483 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 SSBP1Q04837 148 aaKnown RBP11.54□□□□□ -0.56
USP40-201ENST00000251722 CD300CQ08708 224 aa11.54□□□□□ -0.56
USP40-201ENST00000251722 BEX5Q5H9J7 111 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms