RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 TRAP1Q12931 704 aaKnown RBP12.39□□□□□ -0.43
SYNE2-228ENST00000639659 IFI44LQ53G44 452 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 PGM2L1Q6PCE3 622 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ZNF826PQ6ZT77 177 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 TMPRSS11FQ6ZWK6 438 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ADCK1Q86TW2 530 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 CYP4Z1Q86W10 505 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 LDLRAD3Q86YD5 345 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 FGFRL1Q8N441 504 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 C11orf44Q8N8P7 122 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ZSCAN4Q8NAM6 433 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-228ENST00000639659 OR2AJ1Q8NGZ0 328 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 HSH2DQ96JZ2 352 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ATP6V1G3Q96LB4 118 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 ATF6BQ99941 703 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 SRA1Q9HD15 236 aaKnown RBP12.39□□□□□ -0.43
SYNE2-228ENST00000639659 SIRT7Q9NRC8 400 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 GID8Q9NWU2 228 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 AURKCQ9UQB9 309 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 N6AMT1Q9Y5N5 214 aa12.39□□□□□ -0.43
SYNE2-228ENST00000639659 PIN1P1O15428 100 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 CRABP1P29762 137 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 MDH1P40925 334 aaKnown RBP12.38□□□□□ -0.43
SYNE2-228ENST00000639659 RPS6KA3P51812 740 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 FAM189A2Q15884 450 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 KCNMB1Q16558 191 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 FBLN7Q53RD9 439 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 PIP4P2Q8N4L2 257 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 FAM156AQ8NDB6 213 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 OR2AE1Q8NHA4 323 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 STON2Q8WXE9 905 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 ERMAPQ96PL5 475 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-228ENST00000639659 FN3KQ9H479 309 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 NRIP3Q9NQ35 241 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 VPREB3Q9UKI3 123 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 SIGLEC7Q9Y286 467 aa12.38□□□□□ -0.43
SYNE2-228ENST00000639659 NOP16Q9Y3C1 178 aaKnown RBP12.38□□□□□ -0.43
SYNE2-228ENST00000639659 A0A1B0GW55 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 CD300LBA8K4G0 201 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 BBIP1A8MTZ0 92 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 EDF1O60869 148 aaKnown RBP12.37□□□□□ -0.43
SYNE2-228ENST00000639659 PAHP00439 452 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 RENP00797 406 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 FBP1P09467 338 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L2P0CJ85 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L3P0CJ86 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L4P0CJ87 422 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L5P0CJ88 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L6P0CJ89 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L7P0CJ90 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 TROVE2P10155 538 aaKnown RBP eCLIP12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DLX1P56177 255 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 TPTEP56180 551 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 HIST1H3AP68431 136 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 COX10Q12887 443 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 KLF10Q13118 480 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 KLRD1Q13241 179 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 MAPRE2Q15555 327 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 RSPO1Q2MKA7 263 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-228ENST00000639659 HIST2H3PS2Q5TEC6 136 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 SLC18B1Q6NT16 456 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4L9Q6RFH8 374 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-228ENST00000639659 COLCA1Q6ZS62 124 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 HIST2H3AQ71DI3 136 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 FAM90A1Q86YD7 464 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 NMNAT3Q96T66 252 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 PPA2Q9H2U2 334 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 TRIM36Q9NQ86 728 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 RPRD1BQ9NQG5 326 aaKnown RBP12.37□□□□□ -0.43
SYNE2-228ENST00000639659 DUX4Q9UBX2 424 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 B9D1Q9UPM9 204 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 ZNF281Q9Y2X9 895 aa12.37□□□□□ -0.43
SYNE2-228ENST00000639659 CAB39Q9Y376 341 aaPredicted RBP12.37□□□□□ -0.43
SYNE2-228ENST00000639659 IGLV1-36A0A0B4J1U3 117 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 A0A1B0GWJ7 208 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 UNC119BA6NIH7 251 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 M0R135 149 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 CXCR6O00574 342 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 NDUFA2O43678 99 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 SERPINA1P01009 418 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 H1F0P07305 194 aaKnown RBP12.36□□□□□ -0.43
SYNE2-228ENST00000639659 EEF1B2P24534 225 aaKnown RBP12.36□□□□□ -0.43
SYNE2-228ENST00000639659 ELF3P78545 371 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-228ENST00000639659 ECH1Q13011 328 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 BEAN1Q3B7T3 259 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 SNAI3Q3KNW1 292 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 CDONQ4KMG0 1287 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 COQ5Q5HYK3 327 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 METTL21CQ5VZV1 264 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 DPY19L2P2Q6ZN68 376 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 Q6ZTK2 550 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 SLC26A10Q8NG04 563 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 FANK1Q8TC84 345 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 SLC7A13Q8TCU3 470 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 FAM162AQ96A26 154 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 ZNF799Q96GE5 643 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 GPX7Q96SL4 187 aaPredicted RBP12.36□□□□□ -0.43
SYNE2-228ENST00000639659 CCL13Q99616 98 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 SLC22A4Q9H015 551 aa12.36□□□□□ -0.43
SYNE2-228ENST00000639659 C16orf95Q9H693 158 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms