RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 COX10Q12887 443 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 KRTAP27-1Q3LI81 207 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 DNM1P34Q6PK57 102 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 CFAP77Q6ZQR2 320 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 RP9Q8TA86 221 aaKnown RBP16.04■□□□□ 0.16
CLN3-262ENST00000637699 RSRC1Q96IZ7 334 aaKnown RBP16.04■□□□□ 0.16
CLN3-262ENST00000637699 GPX7Q96SL4 187 aaPredicted RBP16.04■□□□□ 0.16
CLN3-262ENST00000637699 CMTM6Q9NX76 183 aa16.04■□□□□ 0.16
CLN3-262ENST00000637699 IGLV1-36A0A0B4J1U3 117 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 CXCR6O00574 342 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 RPS6KA3P51812 740 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 FXYD6P3P58550 94 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 DPY19L2P2Q6ZN68 376 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 Q6ZSV7 163 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 MRPL21Q7Z2W9 205 aaKnown RBP16.03■□□□□ 0.16
CLN3-262ENST00000637699 CYP4Z1Q86W10 505 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 ZSCAN4Q8NAM6 433 aaPredicted RBP16.03■□□□□ 0.16
CLN3-262ENST00000637699 HSH2DQ96JZ2 352 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 B9D1Q9UPM9 204 aa16.03■□□□□ 0.16
CLN3-262ENST00000637699 TRAV38-1A0A0B4J264 116 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 GSTA4O15217 222 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 CCDC22O60826 627 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 PPP1R3DO95685 299 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 TXNDC12O95881 172 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 GYPAP02724 150 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 POU4F2Q12837 409 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 TRAP1Q12931 704 aaKnown RBP16.02■□□□□ 0.16
CLN3-262ENST00000637699 FGD3Q5JSP0 725 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 SLC18B1Q6NT16 456 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 CBLL1Q75N03 491 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 BTN2A1Q7KYR7 527 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 TSEN54Q7Z6J9 526 aaKnown RBP16.02■□□□□ 0.16
CLN3-262ENST00000637699 LDLRAD3Q86YD5 345 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 SLC15A3Q8IY34 581 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 OR6V1Q8N148 313 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 SLC26A10Q8NG04 563 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 ERMAPQ96PL5 475 aaPredicted RBP16.02■□□□□ 0.16
CLN3-262ENST00000637699 ATF6BQ99941 703 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 ELAC2Q9BQ52 826 aaKnown RBP16.02■□□□□ 0.16
CLN3-262ENST00000637699 ADAT1Q9BUB4 502 aaKnown RBP16.02■□□□□ 0.16
CLN3-262ENST00000637699 DPAGT1Q9H3H5 408 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 ANKRD19PQ9H560 264 aa16.02■□□□□ 0.16
CLN3-262ENST00000637699 OOEPA6NGQ2 149 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 UNC119BA6NIH7 251 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 CD300LBA8K4G0 201 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 DVL1O14640 695 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 NDUFA2O43678 99 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 OR10H3O60404 316 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 FCN3O75636 299 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 SERPINA1P01009 418 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 H1F0P07305 194 aaKnown RBP16.01■□□□□ 0.15
CLN3-262ENST00000637699 OMPP47874 163 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 LIPEQ05469 1076 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 ECH1Q13011 328 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 GDPGP1Q6ZNW5 385 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 ZNF826PQ6ZT77 177 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 PIP4P2Q8N4L2 257 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 OR2AJ1Q8NGZ0 328 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 SLC22A4Q9H015 551 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 TRIM36Q9NQ86 728 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 C1orf123Q9NWV4 160 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 AURKCQ9UQB9 309 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 NOP16Q9Y3C1 178 aaKnown RBP16.01■□□□□ 0.15
CLN3-262ENST00000637699 FAM96BQ9Y3D0 163 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 ENPP4Q9Y6X5 453 aa16.01■□□□□ 0.15
CLN3-262ENST00000637699 GMDSO60547 372 aa16■□□□□ 0.15
CLN3-262ENST00000637699 GRPP07492 148 aa16■□□□□ 0.15
CLN3-262ENST00000637699 GGT2P36268 569 aa16■□□□□ 0.15
CLN3-262ENST00000637699 TPTEP56180 551 aa16■□□□□ 0.15
CLN3-262ENST00000637699 C8orf82Q6P1X6 216 aaPredicted RBP16■□□□□ 0.15
CLN3-262ENST00000637699 NMNAT3Q96T66 252 aa16■□□□□ 0.15
CLN3-262ENST00000637699 SEMA6AQ9H2E6 1030 aa16■□□□□ 0.15
CLN3-262ENST00000637699 IGHV3OR15-7A0A075B7D8 119 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 A0A1W2PRQ8 180 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 A6NLC8 198 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 NME4O00746 187 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 PTBP3O95758 552 aaKnown RBP15.99■□□□□ 0.15
CLN3-262ENST00000637699 RENP00797 406 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 HLA-DQA2P01906 255 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 ZNF92Q03936 586 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 DGCR6Q14129 220 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 SEC23BQ15437 767 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 C2orf68Q2NKX9 166 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 SNAI3Q3KNW1 292 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 SLC36A3Q495N2 470 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 DHRS7BQ6IAN0 325 aaPredicted RBP15.99■□□□□ 0.15
CLN3-262ENST00000637699 SMARCD3Q6STE5 483 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 VMO1Q7Z5L0 202 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 ARPINQ7Z6K5 226 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 FAM90A1Q86YD7 464 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 FGFRL1Q8N441 504 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 PLPP7Q8NBV4 271 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 OR2AE1Q8NHA4 323 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 LRTOMTQ8WZ04 291 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 ST8SIA4Q92187 359 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 MYLK2Q9H1R3 596 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 C16orf95Q9H693 158 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 CNTD2Q9H8S5 307 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 EFCAB1Q9HAE3 211 aa15.99■□□□□ 0.15
CLN3-262ENST00000637699 PNRC2Q9NPJ4 139 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms