RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 MRPS33Q9Y291 106 aaKnown RBP0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 TRAPPC4Q9Y296 219 aa0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 AK6Q9Y3D8 172 aaKnown RBP0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 RPL36Q9Y3U8 105 aaKnown RBP0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 WIF1Q9Y5W5 379 aa0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 U3KQV3 271 aa0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 ANK3Q12955 4377 aaKnown RBP0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 CENPEQ02224 2701 aa0.68□□□□□ -2.3
SMARCB1-209ENST00000635578 CSPG4Q6UVK1 2322 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGKV1D-17A0A075B6S4 117 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGKV1D-8A0A087WSZ0 117 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGHV1OR21-1A0A087WYE8 117 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A0G2JLM5 398 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A0G2JN53 185 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGHV5-10-1A0A0J9YXX1 117 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 A0A1W2PNV4 684 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TCRBV9S1A1TA0A576 114 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RGSL1A5PLK6 1076 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 METTL21EPA6NDL7 271 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR51F1A6NGY5 319 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR2AG2A6NM03 316 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 OR52A4PA6NMU1 304 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IQCF5A8MTL0 148 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C12orf71A8MTZ7 269 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C10orf142B7Z368 130 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C4orf51C9J302 202 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PPIAL4DF5H284 164 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 F5H5T6 163 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 H3BQV1 296 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 DFFAO00273 331 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 BTN3A3O00478 584 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CCL21O00585 134 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 XKRYO14609 159 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PPP1R2P9O14990 202 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RRP8O43159 456 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZSCAN12O43309 604 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 AQP9O43315 295 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TRAPPC3O43617 180 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 GMFGO60234 142 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 B4GALT2O60909 372 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ENTPD5O75356 428 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 SUPT3HO75486 399 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 DIRAS1O95057 198 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C6orf47O95873 294 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CD160O95971 181 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGKV1-17P01599 117 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGLV3-19P01714 112 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 IGLV3-27P01718 113 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 APOEP02649 317 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 FABP3P05413 133 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 HLA-DQB2P05538 268 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 UQCRHP07919 91 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MRPL3P09001 348 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CSF3P09919 207 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 H2BFMP0C1H6 154 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 THRAP10827 490 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PNMTP11086 282 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RPS2P15880 293 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF823P16415 610 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TCN2P20062 427 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 COX5AP20674 150 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PTNP21246 168 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 SYT1P21579 422 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TBXA2RP21731 343 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PCMT1P22061 227 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 HNRNPA2B1P22626 353 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NPY1RP25929 384 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PSMA5P28066 241 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PEBP1P30086 187 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CASP14P31944 242 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CD80P33681 288 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 BTCP35070 178 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ATP5C1P36542 298 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RPL13AP40429 203 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ACTR1BP42025 376 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 KIR2DS4P43632 304 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 P2RY1P47900 373 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RGS4P49798 205 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ACTR1AP61163 376 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 RHOAP61586 193 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 HTD2P86397 168 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 GTF2BQ00403 316 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 REG3AQ06141 175 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 INCA1Q0VD86 236 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 BST2Q10589 180 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ASPHQ12797 758 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CUL2Q13617 745 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PRPSAP1Q14558 356 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 MESDQ14696 234 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CYTH1Q15438 398 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 PDK4Q16654 411 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 HNRNPA1L2Q32P51 320 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 SLC36A3Q495N2 470 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ZCWPW2Q504Y3 356 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 CCDC92Q53HC0 331 aaPredicted RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 COA6Q5JTJ3 125 aaKnown RBP0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 TMEM225Q6GV28 225 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 C11orf71Q6IPW1 123 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 ADNP2Q6IQ32 1131 aa0.67□□□□□ -2.3
SMARCB1-209ENST00000635578 NANOGP8Q6NSW7 305 aa0.67□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms