RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 Q6ZR03 302 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 SPRYD4Q8WW59 207 aaPredicted RBP17.6■□□□□ 0.41
CLN3-240ENST00000631023 YIPF5Q969M3 257 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 REPIN1Q9BWE0 567 aaKnown RBP17.6■□□□□ 0.41
CLN3-240ENST00000631023 MROQ9BYG7 248 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 OPA3Q9H6K4 179 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 ZNF275Q9NSD4 429 aaPredicted RBP17.6■□□□□ 0.41
CLN3-240ENST00000631023 TMEM100Q9NV29 134 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 DNAJC27Q9NZQ0 273 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 KLHDC2Q9Y2U9 406 aa17.6■□□□□ 0.41
CLN3-240ENST00000631023 TBX1O43435 398 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 ANPEPP15144 967 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 TNFRSF1AP19438 455 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 HTR1FP30939 366 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 GPR6P46095 362 aaPredicted RBP17.59■□□□□ 0.41
CLN3-240ENST00000631023 ZNF121P58317 390 aaPredicted RBP17.59■□□□□ 0.41
CLN3-240ENST00000631023 ZNF92Q03936 586 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 POU4F2Q12837 409 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 RCN1Q15293 331 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 GLYATL3Q5SZD4 288 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 LRRN1Q6UXK5 716 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 BHLHE23Q8NDY6 225 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 MALRD1Q5VYJ5 2156 aa17.59■□□□□ 0.41
CLN3-240ENST00000631023 SETD2Q9BYW2 2564 aaPredicted RBP17.58■□□□□ 0.41
CLN3-240ENST00000631023 GGT3PA6NGU5 568 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 PHYHO14832 338 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 PPIHO43447 177 aaKnown RBP17.58■□□□□ 0.41
CLN3-240ENST00000631023 TIGD6Q17RP2 521 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 TMEM249Q2WGJ8 235 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 FAM57BQ71RH2 274 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 OR2AE1Q8NHA4 323 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 SLC30A2Q9BRI3 323 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 OR10A2Q9H208 303 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 ADGRL4Q9HBW9 690 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 BRD7Q9NPI1 651 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 C8orf4Q9NR00 106 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 IL19Q9UHD0 177 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 GMPPBQ9Y5P6 360 aa17.58■□□□□ 0.41
CLN3-240ENST00000631023 ZNF254O75437 659 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 RP2O75695 350 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SBK2P0C263 348 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 CFL1P23528 166 aaKnown RBP17.57■□□□□ 0.4
CLN3-240ENST00000631023 ATP6V1E1P36543 226 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 CHN2P52757 468 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SNRPGP62308 76 aaKnown RBP17.57■□□□□ 0.4
CLN3-240ENST00000631023 TRIP10Q15642 601 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 MEDAGQ5VYS4 303 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SLC35F2Q8IXU6 374 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 ZNF679Q8IYX0 411 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 OR51G2Q8NGK0 314 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 PGAM5Q96HS1 289 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 RDH12Q96NR8 316 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 MBOAT4Q96T53 435 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 CLN6Q9NWW5 311 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.57■□□□□ 0.4
CLN3-240ENST00000631023 NOP16Q9Y3C1 178 aaKnown RBP17.57■□□□□ 0.4
CLN3-240ENST00000631023 LRP12Q9Y561 859 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 IGHV4-61A0A0C4DH41 118 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SNTNA6NMZ2 147 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 CD300LBA8K4G0 201 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 E9PQ18 207 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 TACSTD2P09758 323 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 ROM1Q03395 351 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SLC3A1Q07837 685 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SLC25A30Q5SVS4 291 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 Q71RC1 249 aaPredicted RBP17.57■□□□□ 0.4
CLN3-240ENST00000631023 PRSS45Q7RTY3 260 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 CCL17Q92583 94 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 UBE2FQ969M7 185 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SPSB4Q96A44 273 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 SLC22A4Q9H015 551 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 RGCCQ9H4X1 137 aa17.57■□□□□ 0.4
CLN3-240ENST00000631023 LOC100130705A0A1B0GUX0 176 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 C5orf63A6NC05 138 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 CLDN25C9JDP6 229 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 ZNF670-ZNF695F2Z2N8 137 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 MPZL2O60487 215 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 DCTDP32321 178 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 DDOSTP39656 456 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 PRSS12P56730 875 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 PSMA6P60900 246 aaKnown RBP17.56■□□□□ 0.4
CLN3-240ENST00000631023 CXCR4P61073 352 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 SGK3Q96BR1 496 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 TIMD4Q96H15 378 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 REEP6Q96HR9 211 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 OR8B4Q96RC9 309 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 FAM118AQ9NWS6 357 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 SMPD3Q9NY59 655 aaPredicted RBP17.56■□□□□ 0.4
CLN3-240ENST00000631023 IKZF2Q9UKS7 526 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 COPS3Q9UNS2 423 aa17.56■□□□□ 0.4
CLN3-240ENST00000631023 NSD1Q96L73 2696 aaPredicted RBP17.56■□□□□ 0.4
CLN3-240ENST00000631023 SONP18583 2426 aaKnown RBP17.55■□□□□ 0.4
CLN3-240ENST00000631023 ERICH4A6NGS2 130 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 ACOD1A6NK06 481 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 PSMD9O00233 223 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 LILRA1O75019 489 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 OR2T7P0C7T2 308 aa17.55■□□□□ 0.4
CLN3-240ENST00000631023 SRP9P49458 86 aaKnown RBP17.55■□□□□ 0.4
CLN3-240ENST00000631023 RIDAP52758 137 aaKnown RBP17.55■□□□□ 0.4
CLN3-240ENST00000631023 OCLNQ16625 522 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms