RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 GAL3ST2Q9H3Q3 398 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 LOC107984156A0A0G2JMH3 177 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 OOEPA6NGQ2 149 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 F13BP05160 661 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 OR5G3P0C626 314 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 PAFAH1B2P68402 229 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 CD300CQ08708 224 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 ELAVL1Q15717 326 aaKnown RBP13.74□□□□□ -0.21
COL5A1-208ENST00000618395 ARL17AQ8IVW1 177 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 MS4A3Q96HJ5 214 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 OBP2BQ9NPH6 170 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 ADAMTS4O75173 837 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 POLR2GP62487 172 aaKnown RBP eCLIP13.74□□□□□ -0.21
COL5A1-208ENST00000618395 DACT2Q5SW24 774 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 C6orf132Q5T0Z8 1188 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 BTLAQ7Z6A9 289 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 SLC38A9Q8NBW4 561 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 SMIM19Q96E16 107 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 MFSD2BA6NFX1 497 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 FZD9O00144 591 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 P04436 131 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 CASP6P55212 293 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 ARF6P62330 175 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 HOXC5Q00444 222 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 FOXK2Q01167 660 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 OR5M9Q8NGP3 310 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 PELI2Q9HAT8 420 aa13.74□□□□□ -0.21
COL5A1-208ENST00000618395 CDS2O95674 445 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 FABP5Q01469 135 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 KLRB1Q12918 225 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 ERGIC1Q969X5 290 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 NTNG2Q96CW9 530 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 B4GALT3O60512 393 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 ZNF250P15622 560 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 SRYQ05066 204 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 ZFP30Q9Y2G7 519 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 ZNF732B4DXR9 585 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 USP2O75604 605 aaPredicted RBP13.73□□□□□ -0.21
COL5A1-208ENST00000618395 SOD1P00441 154 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 BTF3P20290 206 aaKnown RBP13.73□□□□□ -0.21
COL5A1-208ENST00000618395 CTSSP25774 331 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 PEX11GQ96HA9 241 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 PRSS16Q9NQE7 514 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 DDNO94850 711 aaPredicted RBP13.73□□□□□ -0.21
COL5A1-208ENST00000618395 CLN3Q13286 438 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 DUSP28Q4G0W2 176 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 MFNGO00587 321 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 EIF3GO75821 320 aaKnown RBP eCLIP13.73□□□□□ -0.21
COL5A1-208ENST00000618395 MARCH1Q8TCQ1 289 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 TEAD3Q99594 435 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 GABARAPL3Q9BY60 117 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 GPR88Q9GZN0 384 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 DUS4LO95620 317 aaKnown RBP13.73□□□□□ -0.21
COL5A1-208ENST00000618395 RAB38P57729 211 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 DHODHQ02127 395 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 TEX30Q5JUR7 227 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 TREX1Q9NSU2 369 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 UBR2Q8IWV8 1755 aa13.73□□□□□ -0.21
COL5A1-208ENST00000618395 DUOX1Q9NRD9 1551 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 C7orf77A4D0Y5 90 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 SLC17A3O00476 420 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 KLF7O75840 302 aaPredicted RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ORM1P02763 201 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 IHHQ14623 411 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 OR1C1Q15619 314 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 LINC00303Q3SY05 128 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 LRRC3BQ96PB8 259 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ULBP3Q9BZM4 244 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 GNB4Q9HAV0 340 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 FOXJ3Q9UPW0 622 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 GUSBP08236 651 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ARSDP51689 593 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 GSG1Q2KHT4 349 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 NUP37Q8NFH4 326 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 OLIG1Q8TAK6 271 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 PISDQ9UG56 409 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 SOX15O60248 233 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 CNIH1O95406 144 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 GAB4Q2WGN9 574 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 Q56UQ5 140 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 BCDIN3DQ7Z5W3 292 aaKnown RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 PRAMEF25A6NGN4 478 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 OR4C46A6NHA9 309 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 CORTO00230 105 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 PRAMEF5Q5TYX0 476 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 PRAMEF6Q5VXH4 476 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 MYPOPQ86VE0 399 aaPredicted RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ZNF583Q96ND8 569 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 CGGBP1Q9UFW8 167 aaPredicted RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ZCWPW2A0A1B0GU75 182 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ERHP84090 104 aaKnown RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 POU3F1Q03052 451 aaPredicted RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 BARHL1Q9BZE3 327 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 IAPPP10997 89 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 BCL3P20749 454 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 RPS21P63220 83 aaKnown RBP13.72□□□□□ -0.21
COL5A1-208ENST00000618395 ETFBKMTQ8IXQ9 262 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 DUSP18Q8NEJ0 188 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 OR13G1Q8NGZ3 307 aa13.72□□□□□ -0.21
COL5A1-208ENST00000618395 AUNIPQ9H7T9 357 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms