RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TIA1P31483 386 aaKnown RBP eCLIP9.18□□□□□ -0.94
VPS39-214ENST00000614932 NAA10P41227 235 aaPredicted RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 POLR2HP52434 150 aaKnown RBP9.18□□□□□ -0.94
VPS39-214ENST00000614932 VAMP2P63027 116 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 ZP2Q05996 745 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 RUNX3Q13761 415 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 Q5PR19 223 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 RPTNQ6XPR3 784 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 TMPRSS7Q7RTY8 843 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 AMZ2Q86W34 360 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 YAF2Q8IY57 180 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 AGBL5Q8NDL9 886 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 OR5K2Q8NHB8 316 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 FGF14Q92915 247 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 MIB2Q96AX9 1013 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 CDC6Q99741 560 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 ICKQ9UPZ9 632 aa9.18□□□□□ -0.94
VPS39-214ENST00000614932 A6NIZ1 184 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 EEF1E1-BLOC1S5C9J1V9 151 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 J3QLW9 94 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 DOK2O60496 412 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 UMODP07911 640 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR13C7P0DN81 318 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 FGF5P12034 268 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 TDGF1P13385 188 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 ZNF19P17023 458 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 DRD3P35462 400 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 TAGLN2P37802 199 aaKnown RBP9.17□□□□□ -0.94
VPS39-214ENST00000614932 UCP2P55851 309 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 RPL19P84098 196 aaKnown RBP9.17□□□□□ -0.94
VPS39-214ENST00000614932 DUSP8Q13202 625 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 PARM1Q6UWI2 310 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 C17orf64Q86WR6 236 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 NRSN1Q8IZ57 195 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 MORN4Q8NDC4 146 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR4D11Q8NGI4 311 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR1P1Q8NH06 330 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 CDS1Q92903 461 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 RAB39BQ96DA2 213 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 DMRT3Q9NQL9 472 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 ANKRD10Q9NXR5 420 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 SLC2A8Q9NY64 477 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR5V1Q9UGF6 321 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 POLR3KQ9Y2Y1 108 aaPredicted RBP9.17□□□□□ -0.94
VPS39-214ENST00000614932 NPIPA2E9PIF3 369 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 HPRT1P00492 218 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 LCATP04180 440 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 CD3DP04234 171 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 CTXN2P0C2S0 81 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 SLC35G6P0C7Q6 338 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 FCARP24071 287 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 UBE2V1Q13404 147 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 PDGFRLQ15198 375 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 ZNF311Q5JNZ3 666 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 SOHLH1Q5JUK2 328 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 PIP5KL1Q5T9C9 394 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 STEAP1BQ6NZ63 245 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 NIPAL3Q6P499 406 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OLIG3Q7RTU3 272 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 MEX3DQ86XN8 651 aaKnown RBP9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR10H4Q8NGA5 316 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR5L2Q8NGL0 311 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 OR14L1PQ8NHC6 308 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 C4orf36Q96KX1 117 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 RNF126Q9BV68 326 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 ZNF430Q9H8G1 570 aaPredicted RBP9.17□□□□□ -0.94
VPS39-214ENST00000614932 INPP5EQ9NRR6 644 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 B3GAT1Q9P2W7 334 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 VAX2Q9UIW0 290 aa9.17□□□□□ -0.94
VPS39-214ENST00000614932 LOC105371242A0A075B767 164 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 SERTM1A2A2V5 107 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 GLOD5A6NK44 160 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 C5orf67F2Z3F1 127 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 AQP7O14520 342 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 SLC31A1O15431 190 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 CALCBP10092 127 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 ALPPL2P10696 532 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 PPICP45877 212 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 H3F3AP84243 136 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 CDK3Q00526 305 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 ZNF658BQ4V348 819 aaPredicted RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 MIDNQ504T8 468 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 RPS26P11Q5JNZ5 115 aaPredicted RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 RD3Q7Z3Z2 195 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 CPOQ8IVL8 374 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 C1orf87Q8N0U7 546 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 ZNF615Q8N8J6 731 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 OR2L2Q8NH16 312 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 WFDC12Q8WWY7 111 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 GNRHR2Q96P88 292 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 MYADMQ96S97 322 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 MIEN1Q9BRT3 115 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 NKX2-4Q9H2Z4 354 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 Q9N2J8 555 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 C2orf16Q68DN1 1984 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 LAMA1P25391 3075 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 CXorf51AA0A1B0GTR3 108 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 C1QTNF3-AMACRE9PGA6 284 aa9.16□□□□□ -0.94
VPS39-214ENST00000614932 ZNF354AO60765 605 aaPredicted RBP9.16□□□□□ -0.94
VPS39-214ENST00000614932 CAPZBP47756 277 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms