RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 MYPOPQ86VE0 399 aaPredicted RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 PRSS35Q8N3Z0 413 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 FAM169BQ8N8A8 192 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ZFP41Q8N8Y5 198 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 HSD17B8Q92506 261 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 MRPL48Q96GC5 212 aaKnown RBP8.16□□□□□ -1.1
TRIM28-208ENST00000597172 MS4A3Q96HJ5 214 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 POM121L2Q96KW2 1035 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 WFIKKN1Q96NZ8 548 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 OPALINQ96PE5 141 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 MGLLQ99685 303 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 KCNJ15Q99712 375 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ATF6BQ99941 703 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 HDHD2Q9H0R4 259 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 ISYNA1Q9NPH2 558 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 OBP2BQ9NPH6 170 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 FAM206AQ9NX38 181 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 FRRS1LQ9P0K9 344 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 SCOCQ9UIL1 159 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 AMDHD2Q9Y303 409 aa8.16□□□□□ -1.1
TRIM28-208ENST00000597172 KMT2CQ8NEZ4 4911 aaKnown RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 F5H5K5 113 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 IGLV1-44P01699 117 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 ACSM4P0C7M7 580 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 FAM157CP0CG43 387 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 HSMCR30P0CW71 290 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 CCL2P13500 99 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 STOMP27105 288 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 LIPAP38571 399 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 RPL5P46777 297 aaKnown RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 HTR5AP47898 357 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 TGM4P49221 684 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 MMP16P51512 607 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 PRKXP51817 358 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 GBX2P52951 348 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 GRB2P62993 217 aaKnown RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 MFGE8Q08431 387 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 TPBGQ13641 420 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 PPA1Q15181 289 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 TAF13Q15543 124 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 TIGD6Q17RP2 521 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 ARMCX4Q5H9R4 360 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 DMKNQ6E0U4 476 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 CATSPERDQ86XM0 798 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 ALDH16A1Q8IZ83 802 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 PAQR4Q8N4S7 273 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 IL17RDQ8NFM7 739 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 OR2G2Q8NGZ5 317 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 LINC01560Q8TB33 94 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 RPS4Y2Q8TD47 263 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 FCGR1BQ92637 280 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 MYCBPQ99417 103 aaPredicted RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 USB1Q9BQ65 265 aaKnown RBP8.15□□□□□ -1.1
TRIM28-208ENST00000597172 G6PC2Q9NQR9 355 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 NPAP1Q9NZP6 1156 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 ZNF319Q9P2F9 582 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 ATPIF1Q9UII2 106 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 SLC22A13Q9Y226 551 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 R4GMQ9 66 aa8.15□□□□□ -1.1
TRIM28-208ENST00000597172 DSCAMO60469 2012 aa8.15□□□□□ -1.11
TRIM28-208ENST00000597172 IGHV1-18A0A0C4DH31 117 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 IQCMA0A1B0GVH7 501 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 TMEM269A0A1B0GVZ9 245 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 C5orf49A4QMS7 147 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 OR4C45A6NMZ5 311 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 M0R135 149 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 PLPP2O43688 288 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 CECR9P0C854 216 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 EPXP11678 715 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 ZNF35P13682 527 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 CPEP16870 476 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 CELP19835 753 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 PSMB9P28065 219 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 HSD11B1P28845 292 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 WNT5AP41221 380 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 KIR3DL2P43630 455 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 CX3CR1P49238 355 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 IDH3GP51553 393 aaPredicted RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 TPTEP56180 551 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 ZNF121P58317 390 aaPredicted RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 BDH1Q02338 343 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 PLP2Q04941 152 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 MLLT11Q13015 90 aaPredicted RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 MRPL28Q13084 256 aaKnown RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 ALKBH1Q13686 389 aaKnown RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 BLMHQ13867 455 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 CDK5R1Q15078 307 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 SSX1Q16384 188 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 TSTQ16762 297 aaKnown RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 CCDC58Q4VC31 144 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 WDR38Q5JTN6 314 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 C1QTNF12Q5T7M4 302 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 RPL22L1Q6P5R6 122 aaKnown RBP8.14□□□□□ -1.11
TRIM28-208ENST00000597172 COLCA1Q6ZS62 124 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 FAM220AQ7Z4H9 259 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 ZNF283Q8N7M2 679 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 SLC30A7Q8NEW0 376 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 OR13F1Q8NGS4 319 aa8.14□□□□□ -1.11
TRIM28-208ENST00000597172 PIGTQ969N2 578 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms