RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 LINC00471Q8N535 108 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 FANK1Q8TC84 345 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 BCAS4Q8TDM0 211 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 NMD3Q96D46 503 aaKnown RBP12.81□□□□□ -0.36
LIG1-214ENST00000597146 WACQ9BTA9 647 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 THTPAQ9BU02 230 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 TRIM15Q9C019 465 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 OR2H1Q9GZK4 316 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 POFUT1Q9H488 388 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 ELOVL3Q9HB03 270 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 SRA1Q9HD15 236 aaKnown RBP12.81□□□□□ -0.36
LIG1-214ENST00000597146 GCM1Q9NP62 436 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 EMC7Q9NPA0 242 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 NRIP3Q9NQ35 241 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 CLN8Q9UBY8 286 aa12.81□□□□□ -0.36
LIG1-214ENST00000597146 H3BSA7 217 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 K7EIL1 84 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 P2RY10O00398 339 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 ENSAO43768 121 aaKnown RBP12.8□□□□□ -0.36
LIG1-214ENST00000597146 TSPAN9O75954 239 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 PPP1R3DO95685 299 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 MMP9P14780 707 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 CRABP1P29762 137 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 FHL1Q13642 323 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 MESTQ5EB52 335 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 FAM201AQ5SY85 155 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 FOXB2Q5VYV0 432 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 WDR25Q64LD2 544 aaPredicted RBP12.8□□□□□ -0.36
LIG1-214ENST00000597146 LYPD2Q6UXB3 125 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 ZER1Q7Z7L7 766 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 SYT9Q86SS6 491 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 ADCK1Q86TW2 530 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 LYG1Q8N1E2 194 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 OR52L1Q8NGH7 329 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 NABP1Q96AH0 204 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 DHRS1Q96LJ7 313 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 SYT4Q9H2B2 425 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 POLE4Q9NR33 117 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 KIF17Q9P2E2 1029 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 IL19Q9UHD0 177 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 PRPF19Q9UMS4 504 aaKnown RBP12.8□□□□□ -0.36
LIG1-214ENST00000597146 FOXJ3Q9UPW0 622 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 COA3Q9Y2R0 106 aaPredicted RBP12.8□□□□□ -0.36
LIG1-214ENST00000597146 SIGLEC9Q9Y336 463 aa12.8□□□□□ -0.36
LIG1-214ENST00000597146 IGHV1-69DA0A0B4J2H0 117 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 IGHV3-64DA0A0J9YX35 117 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 GNGT2O14610 69 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 GYG2O15488 501 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 SGCEO43556 437 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 TOX4O94842 621 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 CCNB2O95067 398 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 IGHV1-69P01742 117 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 HLA-DQA2P01906 255 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 ZNF404Q494X3 552 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 NLRC3Q7RTR2 1065 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 PDZD9Q8IXQ8 264 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 SCCPDHQ8NBX0 429 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 LHX4Q969G2 390 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 CCDC124Q96CT7 223 aaKnown RBP12.79□□□□□ -0.36
LIG1-214ENST00000597146 NUAK2Q9H093 628 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 WNT5BQ9H1J7 359 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 OR52D1Q9H346 318 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 REEP1Q9H902 201 aa12.79□□□□□ -0.36
LIG1-214ENST00000597146 NDRG4Q9ULP0 352 aaKnown RBP12.79□□□□□ -0.36
LIG1-214ENST00000597146 TENM2Q9NT68 2774 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 ZNF879B4DU55 563 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 IMPA2O14732 288 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 IDH3BO43837 385 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 XPNPEP2O43895 674 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 SEMG1P04279 462 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 ZNF26P17031 533 aaPredicted RBP12.78□□□□□ -0.36
LIG1-214ENST00000597146 CPT2P23786 658 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 FPR3P25089 353 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 CDKN2AP42771 156 aaKnown RBP12.78□□□□□ -0.36
LIG1-214ENST00000597146 HTR5AP47898 357 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 ERFP50548 548 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 TSPAN31Q12999 210 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 TRPM8Q7Z2W7 1104 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 FAM122BQ7Z309 247 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 OR10AD1Q8NGE0 317 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 OR4K13Q8NH42 304 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 LRTOMTQ8WZ04 291 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 C4orf45Q96LM5 186 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 KRTAP17-1Q9BYP8 105 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 SEMA6AQ9H2E6 1030 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 MAGIXQ9H6Y5 334 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 VPREB3Q9UKI3 123 aa12.78□□□□□ -0.36
LIG1-214ENST00000597146 PHYHO14832 338 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 DOK2O60496 412 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 ABHD16AO95870 558 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 CTLA4P16410 223 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 ATP6V1B2P21281 511 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 LSM6P62312 80 aaKnown RBP12.77□□□□□ -0.37
LIG1-214ENST00000597146 ENDOGQ14249 297 aaKnown RBP12.77□□□□□ -0.37
LIG1-214ENST00000597146 SLC36A3Q495N2 470 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 CLEC12AQ5QGZ9 265 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 SLC35F1Q5T1Q4 408 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 SLC35E4Q6ICL7 350 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 RPL13AP3Q6NVV1 102 aa12.77□□□□□ -0.37
LIG1-214ENST00000597146 C1orf94Q6P1W5 598 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms