RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 A0A1W2PP11 408 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 SDCBPO00560 298 aaPredicted RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 ADAP1O75689 374 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 AQP8O94778 261 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 SNRNP70P08621 437 aaKnown RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 TLE3Q04726 772 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 AIMP2Q13155 320 aaKnown RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 CCINQ13939 588 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 SHHQ15465 462 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 GUCA2BQ16661 112 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 JMJD6Q6NYC1 403 aaPredicted RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 TMEM229BQ8NBD8 167 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 ASB17Q8WXJ9 295 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 FOXRED1Q96CU9 486 aaPredicted RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 ZDHHC12Q96GR4 267 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 UTP23Q9BRU9 249 aaKnown RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 ST6GALNAC5Q9BVH7 336 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 DUSP15Q9H1R2 295 aaPredicted RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 METTL8Q9H825 291 aaKnown RBP13.64□□□□□ -0.23
UPF1-204ENST00000596842 GIMD1P0DJR0 217 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 ABOP16442 354 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 ABCD3P28288 659 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 HYAL1Q12794 435 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 SOX7Q9BT81 388 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 TXNIPQ9H3M7 391 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 GAREM1Q9H706 876 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 RASL12Q9NYN1 266 aa13.64□□□□□ -0.23
UPF1-204ENST00000596842 HCKP08631 526 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 HOXC4P09017 264 aaPredicted RBP13.63□□□□□ -0.23
UPF1-204ENST00000596842 BLKP51451 505 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 NCMAPQ5T1S8 102 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 C9orf40Q8IXQ3 194 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 LAT2Q9GZY6 243 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 SLC25A32Q9H2D1 315 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 GDF2Q9UK05 429 aaPredicted RBP13.63□□□□□ -0.23
UPF1-204ENST00000596842 FAM221BA6H8Z2 402 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 SULT1C2O00338 296 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 CDAP32320 146 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 CASRP41180 1078 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 CAPZBP47756 277 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 EMP2P54851 167 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 SGCBQ16585 318 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 STOML3Q8TAV4 291 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 OR51E1Q8TCB6 317 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 HOXB13Q92826 284 aaPredicted RBP13.63□□□□□ -0.23
UPF1-204ENST00000596842 ACKR4Q9NPB9 350 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 DCAF16Q9NXF7 216 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 CPED1A4D0V7 1026 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 H7C1Q1 480 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 KNG1P01042 644 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 CLPSP04118 112 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 SFTPBP07988 381 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 ZNF20P17024 532 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 FAM76BQ5HYJ3 339 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 ACOT7LQ6ZUV0 252 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 ABHD12BQ7Z5M8 362 aaPredicted RBP13.63□□□□□ -0.23
UPF1-204ENST00000596842 CATSPERDQ86XM0 798 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 ST7LQ8TDW4 575 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 ADAMTS18Q8TE60 1221 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 PRRT1Q99946 306 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 S1PR5Q9H228 398 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 VSX1Q9NZR4 365 aaPredicted RBP13.63□□□□□ -0.23
UPF1-204ENST00000596842 FAM96BQ9Y3D0 163 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 MYO7BQ6PIF6 2116 aa13.63□□□□□ -0.23
UPF1-204ENST00000596842 BCL2L11O43521 198 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 HOXB5P09067 269 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 HSD11B1P28845 292 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 FNDC7Q5VTL7 733 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 ADAT3Q96EY9 351 aaPredicted RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 IGLV1-36A0A0B4J1U3 117 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 C9orf170A2RU37 121 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 DNASE2O00115 360 aaPredicted RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 CSRP1P21291 193 aaKnown RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 SLC6A8P48029 635 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 BIDP55957 195 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 IKZF1Q13422 519 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 LYG2Q86SG7 212 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 ZNF565Q8N9K5 539 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 BHLHE23Q8NDY6 225 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 SLC26A10Q8NG04 563 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 OR4K15Q8NH41 348 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 ZNF251Q9BRH9 671 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 SUSD2Q9UGT4 822 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 NDRG3Q9UGV2 375 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 TNFSF18Q9UNG2 199 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 R4GMQ9 66 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 RNF222A6NCQ9 220 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 A8MVM7 634 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 NFYBP25208 207 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 CRABP1P29762 137 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 OR1D5P58170 312 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 PPIAP62937 165 aaKnown RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 SRSF3P84103 164 aaKnown RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 EBPQ15125 230 aaKnown RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 RSPO4Q2I0M5 234 aaPredicted RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 PTCRAQ6ISU1 281 aaPredicted RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 C8orf44Q96CB5 159 aa13.62□□□□□ -0.23
UPF1-204ENST00000596842 INTS12Q96CB8 462 aaKnown RBP13.62□□□□□ -0.23
UPF1-204ENST00000596842 POLR2HP52434 150 aaKnown RBP13.61□□□□□ -0.23
UPF1-204ENST00000596842 ZNF585AQ6P3V2 769 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms