RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 GGT2P36268 569 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 CFHR2P36980 270 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 RAG2P55895 527 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 SPATS1Q496A3 300 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 FIP1L1Q6UN15 594 aaKnown RBP17.5■□□□□ 0.39
VPS53-216ENST00000574029 C16orf89Q6UX73 402 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 TMEM86BQ8N661 226 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 KIR3DL3Q8N743 410 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 FAM86B1Q8N7N1 296 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 OR2AJ1Q8NGZ0 328 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 OR4F5Q8NH21 305 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 OR4K13Q8NH42 304 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 FANK1Q8TC84 345 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 OR52D1Q9H346 318 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 MARCH7Q9H992 704 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 RPRD1BQ9NQG5 326 aaKnown RBP17.5■□□□□ 0.39
VPS53-216ENST00000574029 UFSP2Q9NUQ7 469 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 DCAF13Q9NV06 445 aaKnown RBP17.5■□□□□ 0.39
VPS53-216ENST00000574029 C1RLQ9NZP8 487 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 RNF7Q9UBF6 113 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 CTSZQ9UBR2 303 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 CD300AQ9UGN4 299 aa17.5■□□□□ 0.39
VPS53-216ENST00000574029 ZNF879B4DU55 563 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 P2RY10O00398 339 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 TNFRSF13BO14836 293 aaPredicted RBP17.49■□□□□ 0.39
VPS53-216ENST00000574029 NDUFA7O95182 113 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 CRYBA1P05813 215 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 LIPFP07098 398 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 HSD17B1P14061 328 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 MMP9P14780 707 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 HOXA4Q00056 320 aaPredicted RBP17.49■□□□□ 0.39
VPS53-216ENST00000574029 RELBQ01201 579 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 SRSF4Q08170 494 aaKnown RBP17.49■□□□□ 0.39
VPS53-216ENST00000574029 KCNJ8Q15842 424 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 CD276Q5ZPR3 534 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 RUSC1-AS1Q66K80 236 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 GLYATQ6IB77 296 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 SPRYD4Q8WW59 207 aaPredicted RBP17.49■□□□□ 0.39
VPS53-216ENST00000574029 FAM71F1Q96KD3 344 aaPredicted RBP17.49■□□□□ 0.39
VPS53-216ENST00000574029 TBX15Q96SF7 602 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 CDRT15Q96T59 188 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 PCGF1Q9BSM1 259 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 CHIAQ9BZP6 476 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 SLC22A4Q9H015 551 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 FN3KRPQ9HA64 309 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 TNFRSF19Q9NS68 423 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 ERVK-18Q9QC07 812 aa17.49■□□□□ 0.39
VPS53-216ENST00000574029 SAMD4AQ9UPU9 718 aaKnown RBP17.49■□□□□ 0.39
VPS53-216ENST00000574029 OR6C68A6NDL8 312 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 SFTPBP07988 381 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 MELTFP08582 738 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 T-ENOLP0DO92 83 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 CA6P23280 308 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 TPTEP56180 551 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 OR8G1Q15617 311 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 MIDNQ504T8 468 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 SAMD4BQ5PRF9 694 aaKnown RBP17.48■□□□□ 0.39
VPS53-216ENST00000574029 OLFML2AQ68BL7 652 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 C17orf107Q6ZR85 190 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 MRPL21Q7Z2W9 205 aaKnown RBP17.48■□□□□ 0.39
VPS53-216ENST00000574029 MAP6Q96JE9 813 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 TECTBQ96PL2 329 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 MRPL22Q9NWU5 206 aaKnown RBP17.48■□□□□ 0.39
VPS53-216ENST00000574029 PDP1Q9P0J1 537 aaPredicted RBP17.48■□□□□ 0.39
VPS53-216ENST00000574029 NOP16Q9Y3C1 178 aaKnown RBP17.48■□□□□ 0.39
VPS53-216ENST00000574029 POMT1Q9Y6A1 747 aa17.48■□□□□ 0.39
VPS53-216ENST00000574029 CENPVL3A0A0U1RRI6 287 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 CD300LBA8K4G0 201 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 B2RBV5 119 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 LGALS8O00214 317 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 GMDSO60547 372 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 TOX4O94842 621 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 CALB2P22676 271 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 SFRP4Q6FHJ7 346 aaPredicted RBP17.47■□□□□ 0.39
VPS53-216ENST00000574029 DEFB107AQ8IZN7 70 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 PLPP7Q8NBV4 271 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 CITED1Q99966 193 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 IFT27Q9BW83 186 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 MMADHCQ9H3L0 296 aaPredicted RBP17.47■□□□□ 0.39
VPS53-216ENST00000574029 FN3KQ9H479 309 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 GORASP2Q9H8Y8 452 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 KIF17Q9P2E2 1029 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 KCNG2Q9UJ96 466 aa17.47■□□□□ 0.39
VPS53-216ENST00000574029 M0R135 149 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 IDH3BO43837 385 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 HLA-DQA2P01906 255 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 SEMG1P04279 462 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 SMIM11AP58511 58 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 MXRA7P84157 204 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 SNAI3Q3KNW1 292 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 SDR9C7Q8NEX9 313 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 ZNF799Q96GE5 643 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 WDFY2Q96P53 400 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 ADAT1Q9BUB4 502 aaKnown RBP17.46■□□□□ 0.39
VPS53-216ENST00000574029 TRIM36Q9NQ86 728 aa17.46■□□□□ 0.39
VPS53-216ENST00000574029 CLPSL1A2RUU4 121 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 NDUFA2O43678 99 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 GADD45GO95257 159 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 NOS3P29474 1203 aa17.45■□□□□ 0.38
VPS53-216ENST00000574029 OTX1P32242 354 aaPredicted RBP17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms